PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G041200.1.p
Common NameGLYMA_04G041200, LOC100801528
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 170aa    MW: 18910 Da    PI: 9.8867
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G041200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552.1e-173382255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a   l+g
  Glyma.04G041200.1.p 33 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYATPVAAARAYDTAVFHLRG 82
                         69*****99.**********9...336**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-213391IPR016177DNA-binding domain
PROSITE profilePS5103222.1553390IPR001471AP2/ERF domain
SMARTSM003801.4E-373396IPR001471AP2/ERF domain
PfamPF008471.6E-103482IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-303491IPR001471AP2/ERF domain
CDDcd000182.48E-273492No hitNo description
PRINTSPR003675.4E-123445IPR001471AP2/ERF domain
PRINTSPR003675.4E-127292IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MEEAGLGDCC SSNSTITRKS DKRKQQHQQQ EKPYRGIRMR KWGKWVAEIR EPNKRSRIWL  60
GSYATPVAAA RAYDTAVFHL RGPSARLNFP ELLSQDDDVS TQQQGNMSAD SIRKKATQVG  120
ARVDALQTAL QQSSSSHSAN SSHVSSSDKP DLNEYPKPED YWSRGLVAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-153290463ATERF1
3gcc_A1e-153290463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11724RKSDKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.626630.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in flowers, leaves, and stems, and at very low levels in roots. {ECO:0000269|PubMed:9192694}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G041200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLK9365070.0LK936507.1 Glycine max mRNA for DREB2 factor (DREB2 gene), cultivar DT2008.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006578035.11e-124ethylene-responsive transcription factor RAP2-1 isoform X1
RefseqXP_006578036.11e-124ethylene-responsive transcription factor RAP2-1 isoform X1
SwissprotQ8LC307e-49RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLK7KI041e-123K7KI04_SOYBN; Uncharacterized protein
STRINGGLYMA04G04355.21e-123(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.13e-49DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]