PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G037800.1.p
Common NameGLYMA_04G037800, LOC100797091
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 229aa    MW: 25763.6 Da    PI: 10.0151
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G037800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.48.2e-16131221199
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                          f+k +++s+ +   +l lp +f++++  +    ++  +tl de+g+++   +  rk++    l++GWk+F+  ++L +gD v+F+l++++
  Glyma.04G037800.1.p 131 FIKSMLQSHISGGFWLGLPVHFCKSNlpK----GDEVMTLIDEDGNEYPTIYLARKTG----LSGGWKGFAVGHDLADGDAVIFQLIKHT 212
                          89*********************999543....4458***************656665....*************************988 PP

                          EE..EEEEE-S CS
                   B3  89 efelvvkvfrk 99 
                           f  +v ++r+
  Glyma.04G037800.1.p 213 AF--KVYIIRA 221
                          88..8888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-20124222IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-24125222IPR015300DNA-binding pseudobarrel domain
CDDcd100171.14E-25129220No hitNo description
SMARTSM010199.3E-23131222IPR003340B3 DNA binding domain
PfamPF023621.1E-13131221IPR003340B3 DNA binding domain
PROSITE profilePS5086312.167131222IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MVAAIAYEES RRKRVEENRK RMEALNLPLL SQALHKSPSP KSSPLKQVKN RTIQKELVVV  60
RRSSRVANLP TPVYKEVVVD RVTIPRRTLG RPYNRHRDYA NRVYASDEAR EEALEKAETL  120
MSGLESEHPA FIKSMLQSHI SGGFWLGLPV HFCKSNLPKG DEVMTLIDED GNEYPTIYLA  180
RKTGLSGGWK GFAVGHDLAD GDAVIFQLIK HTAFKVYIIR ANSPPEDK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.384350.0cotyledon
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G037800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003523918.11e-169B3 domain-containing protein At5g42700
RefseqXP_028227628.11e-169B3 domain-containing protein At5g42700-like
SwissprotQ9FMZ45e-75Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLA0A445KV911e-168A0A445KV91_GLYSO; B3 domain-containing protein
TrEMBLI1JTI31e-168I1JTI3_SOYBN; Uncharacterized protein
STRINGGLYMA04G04030.11e-169(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33363168
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.14e-74B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]