PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.04G036700.1.p | ||||||||
Common Name | GLYMA_04G036700, Glyma04g03910.1, LOC100781727 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 211aa MW: 23679.2 Da PI: 7.9928 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.9 | 1.2e-18 | 34 | 79 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed +l ++v+q+G+++W++I+r++ gR++k+c++rw + Glyma.04G036700.1.p 34 KGPWSAQEDRILTRLVEQYGPRNWSLISRYIK-GRSGKSCRLRWCNQ 79 79*****************************9.***********985 PP | |||||||
2 | Myb_DNA-binding | 58 | 2.2e-18 | 88 | 130 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++t+Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ Glyma.04G036700.1.p 88 PFSTQEDETIIAAHARYGNR-WATIARLLP-GRTDNAVKNHWNST 130 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.833 | 29 | 84 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.33E-31 | 31 | 127 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-16 | 33 | 82 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-17 | 34 | 79 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-24 | 35 | 87 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.03E-15 | 36 | 78 | No hit | No description |
SMART | SM00717 | 2.7E-15 | 85 | 133 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.59 | 86 | 135 | IPR017930 | Myb domain |
CDD | cd00167 | 1.09E-11 | 88 | 131 | No hit | No description |
Pfam | PF00249 | 4.4E-15 | 88 | 130 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 88 | 134 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MEEMNRSSSS TSSSSHCCSL ESNHRSPNKP DRIKGPWSAQ EDRILTRLVE QYGPRNWSLI 60 SRYIKGRSGK SCRLRWCNQL SPTVEHRPFS TQEDETIIAA HARYGNRWAT IARLLPGRTD 120 NAVKNHWNST LKRRAKGINV NVNDADNEDD PLTALTLAPP GIANATLTED AVPDHRASPE 180 SAAEGFWDMM RDVIAREVRE YVSSNFSDNN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-41 | 30 | 135 | 54 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-41 | 30 | 135 | 54 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.2663 | 0.0 | cotyledon| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in leaves from the third leaf to rosette leaves from six-week old plants. Expression follows a development-dependent gradient in successive leaves. {ECO:0000269|PubMed:9678577}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems and flowers. Expressed in dry seeds (PubMed:9678577). Expressed in root vasculature, root tips and lateral root (PubMed:17675404). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:9678577}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.04G036700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031187 | 0.0 | KT031187.1 Glycine max clone HN_CCL_39 MYB/HD-like transcription factor (Glyma04g03910.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006578007.1 | 1e-156 | transcription factor MYB77 | ||||
Refseq | XP_028227613.1 | 1e-156 | transcription factor MYB77-like | ||||
Swissprot | Q9SN12 | 1e-57 | MYB77_ARATH; Transcription factor MYB77 | ||||
TrEMBL | A0A445KVK9 | 1e-154 | A0A445KVK9_GLYSO; Transcription factor MYB77 | ||||
TrEMBL | I1JTH1 | 1e-154 | I1JTH1_SOYBN; MYB/HD-like transcription factor | ||||
STRING | GLYMA04G03910.1 | 1e-155 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5074 | 32 | 56 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 3e-59 | myb domain protein 77 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.04G036700.1.p |
Entrez Gene | 100781727 |
Publications ? help Back to Top | |||
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