PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.04G031300.1.p | ||||||||
Common Name | GLYMA_04G031300, LOC100789698 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 92aa MW: 10690 Da PI: 9.124 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.3 | 2.3e-10 | 3 | 45 | 4 | 44 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT eE ++ da + +G++ +W +a+ +g g++ ++k ++ Glyma.04G031300.1.p 3 WTREENRRFEDALAVHGPNdpnRWQHVANAVG-GKSVQEVKMHY 45 *****************99*************.********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.819 | 1 | 53 | IPR017884 | SANT domain |
SuperFamily | SSF46689 | 1.87E-12 | 3 | 56 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-5 | 3 | 46 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.59E-7 | 3 | 45 | No hit | No description |
Pfam | PF00249 | 6.5E-8 | 3 | 45 | IPR001005 | SANT/Myb domain |
SMART | SM00717 | 3.4E-5 | 3 | 51 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence Send to blast |
MGWTREENRR FEDALAVHGP NDPNRWQHVA NAVGGKSVQE VKMHYEILQE DVIRIERDQI 60 PLPSYRGAAI NINARQNIDN EQRRMRNLSL R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-21 | 3 | 91 | 11 | 93 | RADIALIS |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.04G031300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235400 | 1e-137 | AC235400.1 Glycine max strain Williams 82 clone GM_WBb0120P11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003523825.1 | 1e-61 | protein RADIALIS-like 6 | ||||
Refseq | XP_028226983.1 | 1e-61 | protein RADIALIS-like 6 | ||||
TrEMBL | A0A445KVN9 | 3e-60 | A0A445KVN9_GLYSO; Protein RADIALIS-like 6 | ||||
TrEMBL | I1JTA3 | 3e-60 | I1JTA3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA04G03360.1 | 5e-61 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15365 | 10 | 12 | Representative plant | OGRP347 | 12 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 6e-27 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.04G031300.1.p |
Entrez Gene | 100789698 |