PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G028100.1.p
Common NameGLYMA_04G028100, LOC100790057
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 246aa    MW: 26848.2 Da    PI: 5.0999
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G028100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-183988255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                          ykGVr++  +g+WvAeIr+p   + r +r +lg+f t  eAa a++aa++kl+g
  Glyma.04G028100.1.p 39 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFETSHEAALAYDAAARKLYG 88
                         69****999.**********8...3.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.03E-223898No hitNo description
Gene3DG3DSA:3.30.730.102.2E-303997IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-213996IPR016177DNA-binding domain
SMARTSM003807.0E-3639102IPR001471AP2/ERF domain
PROSITE profilePS5103222.4313996IPR001471AP2/ERF domain
PfamPF008471.3E-133988IPR001471AP2/ERF domain
PRINTSPR003671.1E-94051IPR001471AP2/ERF domain
PRINTSPR003671.1E-96278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MLKSGIGIEE RKQLKKPAQA SSRKGCMRGK GGPENASCTY KGVRQRTWGK WVAEIREPNR  60
GARLWLGTFE TSHEAALAYD AAARKLYGSD AKLNLPELSI KSQSQCPPPS PPPPSSVTNN  120
TQMENLQQIQ NNYIDMATCS NFNNINNPEV SMASQQVGVG PIYTSDSIVS LPLDTNPKPV  180
ENEVEFRPSW ATMNEGLPVF DDSIWAEAAM SLDFPHIAAE TAIYASGNNL ADVGVWDSLQ  240
TPWCM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-194096360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G028100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150354e-82AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003523563.10.0dehydration-responsive element-binding protein 2D
RefseqXP_028226981.10.0dehydration-responsive element-binding protein 2D-like
TrEMBLA0A445KVA30.0A0A445KVA3_GLYSO; Dehydration-responsive element-binding protein 2D
TrEMBLK7KHT10.0K7KHT1_SOYBN; Uncharacterized protein
STRINGGLYMA04G03070.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.13e-42ERF family protein