PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.04G027400.1.p

Common Name

GLYMA_04G027400, LOC100818588

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

SRS

Protein Properties

Length: 306aa MW: 33185.7 Da PI: 6.8469

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.04G027400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	215.7	1.1e-66	98	245	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstkl 91 s +++CqdCGnqakkdCah RCRtCCksrgf+C+thvkstWvpaakrrer+qqla ++ +++ + ++ +kr++ +++s++ Glyma.04G027400.1.p 98 SMSMNCQDCGNQAKKDCAHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERHQQLAELQLQQQFRGvGDNIPKRHHP-----DTTTSTQLA 182 6789************************************************9998777654424444444433.....333333333 PP DUF702 92 ssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 s ++ + le ++P+evs++a+frcvrvs+vd ++e++aYqt+v+igGhvfkG+LydqG+e+ Glyma.04G027400.1.p 183 SAPQPVTGLELGQFPAEVSTSALFRCVRVSAVDASDEQYAYQTSVNIGGHVFKGFLYDQGPES 245 444556789999***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	8.9E-64	100	244	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	8.5E-27	102	144	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	7.8E-27	195	243	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048467	Biological Process	gynoecium development

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MAGFFSLGGT QNKEEEEVEK GDKNNLLLLR NEEIYNNKGG FEIWPQSSSS YHLSNYFAFG 60 VGPSRRNRSE DVSLCVSEDE STRFGLSVMR TGGSSSSSMS MNCQDCGNQA KKDCAHLRCR 120 TCCKSRGFQC QTHVKSTWVP AAKRRERHQQ LAELQLQQQF RGVGDNIPKR HHPDTTTSTQ 180 LASAPQPVTG LELGQFPAEV STSALFRCVR VSAVDASDEQ YAYQTSVNIG GHVFKGFLYD 240 QGPESSYTGA AAEGSSGGEP QQLGFITAAA TTATTSGNSP FDPSLYPAPL NAFMAGTQFF 300 QPPRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.04G027400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	1e-103	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003523673.1	0.0	protein SHI RELATED SEQUENCE 1
Swissprot	Q9LQZ5	1e-80	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	I1JT63	0.0	I1JT63_SOYBN; Uncharacterized protein
STRING	GLYMA04G03000.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125
Representative plant	OGRP1872	11	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	4e-74	SHI-related sequence 5

Link Out ? help Back to Top
Phytozome	Glyma.04G027400.1.p
Entrez Gene	100818588

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]