PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.04G026200.1.p | ||||||||
Common Name | GLYMA_04G026200, LOC100779731 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 514aa MW: 56676.6 Da PI: 6.6866 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.3 | 5.3e-11 | 341 | 399 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe kv++L++e ++L + +l+ + lkse+ Glyma.04G026200.1.p 341 KRAKRILANRQSAARSKERKMRYIAELEHKVQTLQTETTTLSTQFTKLQRDNSDLKSEN 399 9********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.0E-17 | 337 | 401 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.978 | 339 | 402 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.9E-12 | 341 | 397 | No hit | No description |
Pfam | PF00170 | 1.7E-10 | 341 | 399 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.83E-11 | 341 | 397 | No hit | No description |
CDD | cd14703 | 9.51E-14 | 342 | 392 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 514 aa Download sequence Send to blast |
MEGVDQRNSS AFGVPVPRPP NQKSRMPPSH PSINVSPSAT PYSQYPQRLR SPGSSHSRSL 60 SQPPIFSLDS LPPLSPSPAA VTSMFDSIST TDMSVEESNV SSQVPLNRGH ALLPPRKGHR 120 RSSSDSPLGI SGFMQSSPVP SGGESSGFEK PIQLVLKASF RDSLDGGHAN EPVNGRKEEA 180 ADDLFREYMN LDNFDNLNFP GMEDKDLDSR TSGSKTVESS DNEVESHVNG KASGAQGASS 240 SCSEERREGV KRSSNGEVAP GSRHRRSFSL DSSIGNFNIE DGLPKLPPSK NQMGQHSPSN 300 SMDGKMSETS TEFGNGEFSA EEVKKIMESD KLAEIASTDP KRAKRILANR QSAARSKERK 360 MRYIAELEHK VQTLQTETTT LSTQFTKLQR DNSDLKSENN ECKLRLQAME QQSLLKDALN 420 ETLDAEVRRL RRAVAELGGE SLTSCMARQL AINQQMFELQ HQQPSQQRHF LLQNHHTQEE 480 IESRSQQIQG NELHPQAQIQ SQQIQRNELH PQP* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.22251 | 0.0 | leaf| root| somatic embryo |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.04G026200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC124216 | 4e-37 | AC124216.27 Medicago truncatula clone mth2-34o22, complete sequence. | |||
GenBank | AC174315 | 4e-37 | AC174315.4 Medicago truncatula clone mth2-165c4, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003523619.1 | 0.0 | uncharacterized protein LOC100779731 isoform X1 | ||||
TrEMBL | I1JT50 | 0.0 | I1JT50_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA04G02850.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2272 | 34 | 84 | Representative plant | OGRP126 | 17 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38900.3 | 2e-60 | bZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.04G026200.1.p |
Entrez Gene | 100779731 |