PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.04G017400.9.p

Common Name

GLYMA_04G017400, LOC100790922

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Nin-like

Protein Properties

Length: 908aa MW: 100693 Da PI: 5.9215

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.04G017400.9.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.2	3.8e-29	591	642	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++ Glyma.04G017400.9.p 591 AEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKV 642 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.803	581	662	IPR003035	RWP-RK domain
Pfam	PF02042	6.4E-25	594	642	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.08E-23	813	898	No hit	No description
PROSITE profile	PS51745	27.102	813	896	IPR000270	PB1 domain
SMART	SM00666	2.8E-25	813	896	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.2E-22	813	893	No hit	No description
CDD	cd06407	3.49E-43	814	895	No hit	No description
Pfam	PF00564	8.7E-19	814	895	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 908 aa Download sequence Send to blast
MGDSGVTSSA ATMMEAPPPD GTTTTATSMD FDYMGEFFLD GCWLEASADV SDFLLQSPSF 60 SNPLFDPSLS WPALETNHNK SQDAAFGTQQ ESHNNIVSVV AGGGYSQQFQ SETHSVEGVS 120 EGVRRWWFAP SPIPSPGPGP SIMEKLIRAL MWIKDYNRNK DMLIQIWVPI HKEGRPILAA 180 DDLLFSLESK SLNLAKYREI SVTYEFSAEE SDSKELARGL PGRVFRYKVP EWTPDVRFFR 240 SDEYPRVDHA QEYDVRGTVA VPIFEQGSKT CLGVIEVVMT TQQINYGPEL ESVCKALEAV 300 DLRSSKQLSI QNVKACNRTY EAALPEIYEV LRSACEMHRL PLAQTWVPCV QQGKEGCRHS 360 EDNYLLCISP VEHACYVGDP SIRSFHEACT EHHLLKGEGV AGGAFMTNQP CFSDDITSLS 420 KKDYPLSHYA RLFGLHAAVA IRLRSIYNST DDFVLEFFLP VDCNDSEEQR KMLTALSIII 480 QRVCRSLRVI RDKELEEANL SVDEVIALAD SGFARNAIFS EPQYKGMVAS LDAEEKSSET 540 MGRKFSDLRQ QQESPILKGN LDCVKECSTS VEGNLSSLGT NKTGERRRAK AEKTITLQVL 600 RQYFAGSLKD AAKNIGVCTT TLKRICRQHG IKRWPSRKIK KVGHSLQKLQ LVINSVQGAS 660 GAFQIGSFYS NFPDLASPNL SGTGFFSTLN QSDYPNSTST QPDHGSLSPE GASKSPSSSC 720 SQSSISSHSC SSMSELQQHR TANGAGNKVS TTVSEDSAGV VLKRISSEAE LKSLSQDRAK 780 LLPRSQSQET LGEHPKTQYQ QPLLKTSSSK VDSHRVKVAY GDEKTRFRMP KSWGYEDLLQ 840 EIARRFNVSD MSKFDVKYLD DDCEWVLLTC DADLEECIDV CQSSESGTIK LSLQPSSHSM 900 RSSLEFR*

Sequence ? help Back to Top

Protein Sequence Length: 908 aa Download sequence Send to blast

MGDSGVTSSA ATMMEAPPPD GTTTTATSMD FDYMGEFFLD GCWLEASADV SDFLLQSPSF  60
SNPLFDPSLS WPALETNHNK SQDAAFGTQQ ESHNNIVSVV AGGGYSQQFQ SETHSVEGVS  120
EGVRRWWFAP SPIPSPGPGP SIMEKLIRAL MWIKDYNRNK DMLIQIWVPI HKEGRPILAA  180
DDLLFSLESK SLNLAKYREI SVTYEFSAEE SDSKELARGL PGRVFRYKVP EWTPDVRFFR  240
SDEYPRVDHA QEYDVRGTVA VPIFEQGSKT CLGVIEVVMT TQQINYGPEL ESVCKALEAV  300
DLRSSKQLSI QNVKACNRTY EAALPEIYEV LRSACEMHRL PLAQTWVPCV QQGKEGCRHS  360
EDNYLLCISP VEHACYVGDP SIRSFHEACT EHHLLKGEGV AGGAFMTNQP CFSDDITSLS  420
KKDYPLSHYA RLFGLHAAVA IRLRSIYNST DDFVLEFFLP VDCNDSEEQR KMLTALSIII  480
QRVCRSLRVI RDKELEEANL SVDEVIALAD SGFARNAIFS EPQYKGMVAS LDAEEKSSET  540
MGRKFSDLRQ QQESPILKGN LDCVKECSTS VEGNLSSLGT NKTGERRRAK AEKTITLQVL  600
RQYFAGSLKD AAKNIGVCTT TLKRICRQHG IKRWPSRKIK KVGHSLQKLQ LVINSVQGAS  660
GAFQIGSFYS NFPDLASPNL SGTGFFSTLN QSDYPNSTST QPDHGSLSPE GASKSPSSSC  720
SQSSISSHSC SSMSELQQHR TANGAGNKVS TTVSEDSAGV VLKRISSEAE LKSLSQDRAK  780
LLPRSQSQET LGEHPKTQYQ QPLLKTSSSK VDSHRVKVAY GDEKTRFRMP KSWGYEDLLQ  840
EIARRFNVSD MSKFDVKYLD DDCEWVLLTC DADLEECIDV CQSSESGTIK LSLQPSSHSM  900
RSSLEFR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.28339	0.0	root\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.04G017400.9.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235387	0.0	AC235387.1 Glycine max strain Williams 82 clone GM_WBb0115J10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014629895.1	0.0	protein NLP4 isoform X2
Refseq	XP_028227383.1	0.0	protein NLP4-like isoform X2
Swissprot	Q9LE38	0.0	NLP4_ARATH; Protein NLP4
TrEMBL	A0A445KUC5	0.0	A0A445KUC5_GLYSO; Protein NLP4 isoform A
TrEMBL	K7KHM8	0.0	K7KHM8_SOYBN; Uncharacterized protein
STRING	GLYMA04G01910.3	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Glyma.04G017400.9.p
Entrez Gene	100790922