PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.04G016700.1.p | ||||||||
Common Name | GLYMA_04G016700, LOC100820530 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WOX | ||||||||
Protein Properties | Length: 209aa MW: 23564.8 Da PI: 6.9223 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67 | 2.5e-21 | 78 | 138 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps++++++++ +l +++e++V++WFqNrRa+ k+ Glyma.04G016700.1.p 78 RQRWTPTPLQLQILERIFDEgNGTPSKQKIKDITIELgqhgQISETNVYNWFQNRRARSKR 138 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 100.4 | 1.3e-32 | 77 | 140 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G tP+k++i++it eL ++G+i+++NV++WFQNr+aR+++kq Glyma.04G016700.1.p 77 ARQRWTPTPLQLQILERIFDEGNGTPSKQKIKDITIELGQHGQISETNVYNWFQNRRARSKRKQ 140 789***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 14.657 | 74 | 139 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-16 | 74 | 140 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.3E-14 | 76 | 143 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.95E-18 | 77 | 139 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 6.51E-15 | 78 | 140 | No hit | No description |
Pfam | PF00046 | 4.1E-19 | 78 | 138 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MEAETSNGGG IGGLYVKVMT DDQMELLRQQ ISVYATICEQ LVEMHKAVTT QQDLAGLRLG 60 NLYCDPLMAC SGHKITARQR WTPTPLQLQI LERIFDEGNG TPSKQKIKDI TIELGQHGQI 120 SETNVYNWFQ NRRARSKRKQ LTPAPNVVEP EVESPKEKKT RAEGFQVQPY ENSSPHRIKD 180 MYIQSPDIGF DQLLGKIEVA SCYSSYFL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 131 | 139 | RRARSKRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.39313 | 0.0 | root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.04G016700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 1e-101 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003523048.1 | 1e-156 | WUSCHEL-related homeobox 8 | ||||
Refseq | XP_028227368.1 | 1e-156 | WUSCHEL-related homeobox 8-like | ||||
Swissprot | Q5QMM3 | 2e-77 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A445KUA9 | 1e-155 | A0A445KUA9_GLYSO; WUSCHEL-related homeobox 8 | ||||
TrEMBL | I1JST9 | 1e-155 | I1JST9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA04G01830.1 | 1e-156 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1855 | 34 | 93 | Representative plant | OGRP1873 | 16 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 3e-72 | WUSCHEL related homeobox 13 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.04G016700.1.p |
Entrez Gene | 100820530 |
Publications ? help Back to Top | |||
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