PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G012500.1.p
Common NameGLYMA_04G012500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 431aa    MW: 47584.5 Da    PI: 6.3656
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G012500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.82.2e-09204251455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i ++++ L++l+P +    +k   Ka +L + ++Y++sLq
  Glyma.04G012500.1.p 204 SHSLAERVRREKISERMNYLQDLVPGC----NKVTGKAGMLDEIINYVQSLQ 251
                          8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-17198269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.11E-10198255No hitNo description
Gene3DG3DSA:4.10.280.101.5E-17200267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.504200250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6204251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-10206256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MLGYANPSGN LAVDGDMTVL ERQRARMKWQ EEQEYFSGNS FNGVFSSSSS LHVPDSIMVA  60
ADSGCALAEV VAQAQPRSIN KPSAAPGLHA NSSSISRTFS CPPALVDPEP KPTDSSIGKD  120
SFKKRKTDKP HNPKVVAENE NKDKRIKVGA DDGESKITKC NTINTNTNNK ETCTDTSNSK  180
QNSKASEKPD YIHVRARRGQ ATDSHSLAER VRREKISERM NYLQDLVPGC NKVTGKAGML  240
DEIINYVQSL QRQVEFLSMK LAAVNPRLDF SMDDLFDKDV FPTCAANFPN IGMSSTSSDI  300
TNPAYLPFNS PQQIFQYDGL DTGINPSDVG LRRTISAPVS MPETYLQSSC FTVGFLSVFT  360
YSLFVILVTF FSQFDLIYVC LQQMLPSSTW EGDFQNLCNF DVDQARATSF PSQLLSGNYK  420
FVPCRITFFP *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.15280.0cotyledon| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G012500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0982351e-168BT098235.1 Soybean clone JCVI-FLGm-26H15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003522925.10.0transcription factor bHLH63
RefseqXP_028227314.10.0transcription factor bHLH63-like
TrEMBLI1JSN80.0I1JSN8_SOYBN; Uncharacterized protein
STRINGGLYMA04G01400.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36183463
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.13e-57cryptochrome-interacting basic-helix-loop-helix 1