PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.04G004100.1.p

Common Name

GLYMA_04G004100

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 211aa MW: 23778.3 Da PI: 9.6397

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.04G004100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.6	1e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+ +++ +G g+W++ ++ g+ R++k+c++rw +yl Glyma.04G004100.1.p 14 KGAWTKEEDHRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	56.1	8.8e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++ eEd+l+++++ +lG++ W++Ia +++ gRt++++k++w+++ Glyma.04G004100.1.p 67 RGNFSLEEDQLIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-23	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.197	9	61	IPR017930	Myb domain
SMART	SM00717	8.1E-12	13	63	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.31E-29	13	108	IPR009057	Homeodomain-like
Pfam	PF00249	2.6E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	2.29E-9	16	61	No hit	No description
PROSITE profile	PS51294	27.781	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-27	65	116	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	3.6E-16	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	4.52E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDHRLISYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF SLEEDQLIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIRRKLLSRG 120 IDPATHRPLN DDKVLERCPD LNLELTISPP RQPQSDQHHL KPVGRNSNLC FACSLGLQNS 180 KDHCSCALNT ANAASGHDFL ALKTSVLEMK *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	5e-29	13	116	26	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.4207	0.0	cotyledon\| flower\| hypocotyl\| leaf\| pod\| seed coat\| stem\| vegetative bud

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269\|PubMed:1840903}.
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269\|PubMed:1840903}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.04G004100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ555057	0.0	FJ555057.1 Glycine max transcription factor MYB047 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001236232.2	1e-154	transcription factor MYB047
Swissprot	P81393	1e-105	MYB08_ANTMA; Myb-related protein 308
TrEMBL	E4W696	1e-153	E4W696_SOYBN; Transcription factor MYB047
STRING	GLYMA04G00550.1	1e-154	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF264	34	221
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34990.1	2e-94	myb domain protein 32

Link Out ? help Back to Top
Phytozome	Glyma.04G004100.1.p

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]