PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.03G262200.4.p | ||||||||
Common Name | GLYMA_03G262200, LOC100781489 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 371aa MW: 41400 Da PI: 8.8834 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 98.2 | 5.2e-31 | 38 | 141 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld. 85 f+kv tpsdv+k++rlv+pk++ae++ ++ +e++ l +ed++g++W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ Glyma.03G262200.4.p 38 FEKVATPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKVWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGl 127 89***************************966778999*************************************************655 PP SS.SEE..EEEEE- CS B3 86 gr.sefelvvkvfr 98 g+ + +l++ + r Glyma.03G262200.4.p 128 GDlYRHRLYIDWKR 141 66666666666655 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.8E-41 | 30 | 146 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.58E-29 | 35 | 141 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.02E-27 | 36 | 125 | No hit | No description |
SMART | SM01019 | 1.8E-22 | 38 | 143 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.944 | 38 | 143 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-28 | 38 | 142 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 371 aa Download sequence Send to blast |
MDLSLGSSKE EEEEGNLQQG GGGVVHHAHQ VVEKEHMFEK VATPSDVGKL NRLVIPKQHA 60 EKYFPLDSST NEKGLLLNFE DRNGKVWRFR YSYWNSSQSY VMTKGWSRFV KEKKLDAGDI 120 VSFQRGLGDL YRHRLYIDWK RRPDHAHAHP PHHHDPLFLP SIRLYSLPPT MPPRYHHDHH 180 FHHHLNYNNL FTFQQHQYQQ LGAATTTHHN NYGYQNSGSG SLYYLRSSMS MGGGDQNLQG 240 RGSNIVPMII DSVPVNVAHH NNNRHGNGGI TSGGTNCSGK RLRLFGVNME CASSAEDSKE 300 LSSGSAAHVT TAASSSSLHH QRLRVPVPVP LEDPLSSSAA AAARFGDHKG ASTGTSLLFD 360 LDPSLQYHRH * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 3e-63 | 31 | 143 | 1 | 114 | B3 domain-containing transcription factor NGA1 |
5os9_B | 3e-63 | 31 | 143 | 1 | 114 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.03G262200.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 1e-147 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003520889.1 | 0.0 | B3 domain-containing transcription factor NGA1 isoform X1 | ||||
Refseq | XP_006577361.1 | 0.0 | B3 domain-containing transcription factor NGA1 isoform X1 | ||||
Refseq | XP_006577363.1 | 0.0 | B3 domain-containing transcription factor NGA1 isoform X1 | ||||
Refseq | XP_006577364.1 | 0.0 | B3 domain-containing transcription factor NGA1 isoform X1 | ||||
Refseq | XP_014629549.1 | 0.0 | B3 domain-containing transcription factor NGA1 isoform X1 | ||||
Refseq | XP_028226917.1 | 0.0 | B3 domain-containing transcription factor NGA1-like isoform X1 | ||||
Refseq | XP_028226918.1 | 0.0 | B3 domain-containing transcription factor NGA1-like isoform X1 | ||||
Refseq | XP_028226919.1 | 0.0 | B3 domain-containing transcription factor NGA1-like isoform X1 | ||||
Refseq | XP_028226920.1 | 0.0 | B3 domain-containing transcription factor NGA1-like isoform X1 | ||||
Refseq | XP_028226921.1 | 0.0 | B3 domain-containing transcription factor NGA1-like isoform X1 | ||||
Swissprot | O82799 | 1e-79 | NGA1_ARATH; B3 domain-containing transcription factor NGA1 | ||||
TrEMBL | A0A0B2Q8P5 | 0.0 | A0A0B2Q8P5_GLYSO; B3 domain-containing transcription factor NGA1 | ||||
TrEMBL | K7KH74 | 0.0 | K7KH74_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G42301.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46870.1 | 4e-65 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.03G262200.4.p |
Entrez Gene | 100781489 |