PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G258300.1.p
Common NameGLYMA_03G258300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 663aa    MW: 74073.7 Da    PI: 7.0781
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G258300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.41.4e-23114214198
                          EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                          f k+lt sd++++g +++ +++a+e+     + +++ s++l+ ed++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   
  Glyma.03G258300.1.p 114 FSKILTASDTSTHGGFSVLRRHATEClpqldMTQTTPSQELVAEDLHGFEWKFKHIFRGQPRRHLLTTGWSTFVTSKKLVAGDAFVFL-- 201
                          889***************************966777888*************************************************.. PP

                          SSSEE..EEEEE- CS
                   B3  86 grsefelvvkvfr 98 
                          + +++el+v+v+r
  Glyma.03G258300.1.p 202 RGENGELRVGVRR 214
                          449999*****98 PP
2Auxin_resp99.16.2e-33240319183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          a+ha+ t+++F v+Y+Pr+  s+F++ v+k+++a ++k+svGmRfkm+fe eds+err+sGt+vgv d++p  W nS+WrsLk
  Glyma.03G258300.1.p 240 ASHAFLTSTMFVVYYKPRT--SQFIIGVNKYLEAENNKFSVGMRFKMRFEVEDSPERRFSGTIVGVGDVSP-GWWNSQWRSLK 319
                          679999************6..9*************************************************.999******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.19E-40105243IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-38108229IPR015300DNA-binding pseudobarrel domain
PfamPF023622.0E-21114214IPR003340B3 DNA binding domain
CDDcd100175.60E-20114214No hitNo description
PROSITE profilePS5086312.266114216IPR003340B3 DNA binding domain
SMARTSM010195.0E-22114216IPR003340B3 DNA binding domain
PfamPF065073.5E-30240319IPR010525Auxin response factor
PfamPF023093.8E-7538592IPR033389AUX/IAA domain
SuperFamilySSF542773.86E-12547632No hitNo description
PROSITE profilePS5174525.265556637IPR000270PB1 domain
PfamPF023096.2E-5600637IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MAGVGDGDLY TQLWKLCAGP LVDVPRQGER VFYFPQGHME QLQASTNQGL NQEIPHFNLP  60
PKILCRVVHI QLLAEQETDE VYARITLLPE SNQEEPTSPD PSPPETQKQV FHTFSKILTA  120
SDTSTHGGFS VLRRHATECL PQLDMTQTTP SQELVAEDLH GFEWKFKHIF RGQPRRHLLT  180
TGWSTFVTSK KLVAGDAFVF LRGENGELRV GVRRVARQQS PMPSSVISSQ SMHLGVLATA  240
SHAFLTSTMF VVYYKPRTSQ FIIGVNKYLE AENNKFSVGM RFKMRFEVED SPERRFSGTI  300
VGVGDVSPGW WNSQWRSLKV QWDEPAIIPR PERVSSWEIE PFAASTALNV TQQLVKSKRS  360
RTEVSSSEIA PNSPALAFWY RGPQDPTALG SSTEVQSNEN PVVWSTRQKE INGNPMNSSS  420
KVRVEGMRPS SPHSKPNLFM DPKNCKAVPA QSTVSSRPKD DLAHDPMECA KRSSQNPMNC  480
WIFGVNLTNN ITKNVTLPDK EQLGCPAIIP SGPKDSIPVA ACETEAGQNP YYSLSNKEHK  540
QNISDGSPSA SQRHTRTRTK VQMQGIAVGR AVDLTVLKDY DDLIDELEKM FDIKGELQMQ  600
TKWAITFTDD GNDMMLVGDD PWPEFCTVVK RIFICSREDV KKMKSKHSSS SSVGEETLLS  660
QD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-170234212355Auxin response factor 1
4ldw_A1e-170234212355Auxin response factor 1
4ldw_B1e-170234212355Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.221310.0stem
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G258300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150385e-71AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006577348.10.0auxin response factor 18 isoform X1
SwissprotQ9C5W90.0ARFR_ARATH; Auxin response factor 18
TrEMBLK7KH370.0K7KH37_SOYBN; Auxin response factor
STRINGGLYMA03G41920.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Representative plantOGRP5501582
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61830.10.0auxin response factor 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]