PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G256700.1.p
Common NameGLYMA_03G256700, LOC100127387
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 363aa    MW: 41182.1 Da    PI: 4.8533
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G256700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.92.4e-29128189159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK++ g++fpr+YYrCt++   gC ++k+v+rs+edp+++e+tY+g+H+++
  Glyma.03G256700.1.p 128 LDDGYSWRKYGQKDILGAKFPRGYYRCTQRnvqGCLATKQVQRSDEDPTTIEVTYRGRHTCT 189
                          59**************************998889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.0E-28120190IPR003657WRKY domain
PROSITE profilePS5081123.319123186IPR003657WRKY domain
SuperFamilySSF1182902.62E-25127190IPR003657WRKY domain
SMARTSM007742.8E-40128190IPR003657WRKY domain
PfamPF031061.3E-26129188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MEESTKRKYT NLIHELIQGK ELTKQLSDHL VSSSPSSHET NELLVEKILL SYEKALTMLN  60
WGSIVGEAKT TSLNIMDSRC SFTNSESPRS EVVDREFEHK AVFKKRKTMP RWTEQVKICS  120
RTGLEGSLDD GYSWRKYGQK DILGAKFPRG YYRCTQRNVQ GCLATKQVQR SDEDPTTIEV  180
TYRGRHTCTQ AKHLNKAFSS NIKIGLGENQ FQKNQPLLEK TQQQNPEGIF TFETELKVKT  240
EELETKEDIF PWFSFSSSSI GSENEDNMLP DTMIENHFME SFSPVFISPA TSESNPFCLS  300
AYDLDSTGLL CRNIQTSESD ITEIVSALTS VTNSPILDLD ILLDKGDFDT DFPFNIPEFF  360
SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-19127188768OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.252340.0root
Gma.275160.0epicotyl| flower| hypocotyl| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G256700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195790.0EU019579.1 Glycine max WRKY43 (WRKY43) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003521804.10.0probable WRKY transcription factor 53
TrEMBLI1JRZ20.0I1JRZ2_SOYBN; Uncharacterized protein
STRINGGLYMA03G41750.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.13e-48WRKY family protein