PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G255500.1.p
Common NameGLYMA_03G255500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 302aa    MW: 34214.1 Da    PI: 4.7988
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G255500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-18108156355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +GVr+++ +grW+AeIrdp++   r r++lg+++taeeAa  +++a+ +++g
  Glyma.03G255500.1.p 108 LRGVRQRP-WGRWAAEIRDPVK---RIRVWLGTYDTAEEAAMVYDKAAIAFRG 156
                          69******.**********755...5***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.33E-32106163No hitNo description
SMARTSM003802.0E-34107170IPR001471AP2/ERF domain
PROSITE profilePS5103222.945107164IPR001471AP2/ERF domain
PRINTSPR003672.3E-9108119IPR001471AP2/ERF domain
PfamPF008471.1E-11108156IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-20108163IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-28109164IPR001471AP2/ERF domain
PRINTSPR003672.3E-9130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MYHSLHFMEA RFSERKVVTY KHVKPGDILN AAPKVVRISV MDPYATDDED EDEGLVIHPR  60
MKKFVNEIRI VEKSSTNCES AGVNRTSNVS LRQHYKGKTG DSLEKKRLRG VRQRPWGRWA  120
AEIRDPVKRI RVWLGTYDTA EEAAMVYDKA AIAFRGSKAL TNFIKPPTRE DLCDCGPNET  180
EASVAVSGEN DSSEESHLSS PTSVLGLQSV ELMLDEVSET DLPSKEESSS QDSFLFLDSH  240
SPSIDCYFNF ETLPPVFLHE TSITQQPDFH DKFSDISHLV NEDFQSWNWD IDSYFSDPLL  300
I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-22106163159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-22106163462ATERF1
3gcc_A5e-22106163462ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G255500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-48AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520867.30.0ethylene-responsive transcription factor CRF6
TrEMBLI1JRX60.0I1JRX6_SOYBN; Uncharacterized protein
STRINGGLYMA03G41640.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.15e-38cytokinin response factor 6