PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.03G250600.1.p | ||||||||
Common Name | GLYMA_03G250600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 210aa MW: 23694.8 Da PI: 9.6323 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.3 | 1.5e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv ++++G g+W++ ++ g+ R++k+c++rw +yl Glyma.03G250600.1.p 14 KGPWTAEEDQILVSHIQRYGHGNWRALPKQAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51.3 | 2.7e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ +++++ lG++ W++Ia+ ++ gRt++++k++w+++l Glyma.03G250600.1.p 67 RGKFSKEEEDTILKLHGILGNR-WSAIAASLP-GRTDNEIKNFWHTHL 112 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.6E-26 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.711 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.97E-31 | 10 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.8E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.4E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.21E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.715 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.6E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.55E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MTRTPCCERM GLKKGPWTAE EDQILVSHIQ RYGHGNWRAL PKQAGLLRCG KSCRLRWINY 60 LRPDIKRGKF SKEEEDTILK LHGILGNRWS AIAASLPGRT DNEIKNFWHT HLKKRIQKSG 120 VHNGNPSSRI LQEAQANTSS NASSVMIANY GLPSRNINPP IAGFYGAVSS DTFGEIKDNH 180 GSCQLSEEME FWYNIYSSNQ GKHHETMEI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-28 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.28589 | 0.0 | epicotyl |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.03G250600.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001237727.1 | 1e-157 | myb-related protein Myb4 | ||||
Swissprot | Q7XBH4 | 3e-73 | MYB4_ORYSJ; Transcription factor MYB4 | ||||
TrEMBL | A0A445LGW9 | 1e-156 | A0A445LGW9_GLYSO; Transcription factor MYB4 | ||||
TrEMBL | I1JRS3 | 1e-156 | I1JRS3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G41100.1 | 1e-157 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 7e-72 | myb domain protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.03G250600.1.p |
Publications ? help Back to Top | |||
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