PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G247100.1.p
Common NameGLYMA_03G247100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 415aa    MW: 45051.2 Da    PI: 7.5042
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G247100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.87.5e-16225280459
                          XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                           kr rr+ +NRe+ArrsR+RK+a + eLe+ v +L +eN++L k+    ++++++ 
  Glyma.03G247100.1.p 225 AKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRSENSSLLKRFTDVSQKYSNA 280
                          79*****************************************9999888888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.5E-19222286IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.576224276IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.8E-12224277No hitNo description
PfamPF001703.0E-13225278IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.95E-12226277No hitNo description
PROSITE patternPS000360229244IPR004827Basic-leucine zipper domain
PfamPF124982.1E-44293406IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MNEIQILIVA ITIHKRLDFG MERVLSVDEI SEQYWVAASS SSSSSSSSFK SKMNRSESEW  60
AFQQFLQQEA ASSSSNSDHD DDHHHAKLKK ESNTNIPVTL HVDSQDYHAI LKTKLNLACA  120
AVAMTRGSLV KSQNPDSGPQ ASNFSEVGSH ATLKGSGPFG NDDPSKLQNK DIKAQIGIPS  180
SPSMQNKSAV VAMRPTISGS SGEQSDDEEA EGEINMTGNM TPVDAKRVRR MLSNRESARR  240
SRRRKQAHLT ELETQVSQLR SENSSLLKRF TDVSQKYSNA AVDNRVLKAD VETLRAKVKM  300
AEETVKRITG LSPMLHAMTE MSSLGMPLFD ESPSETSADA AVPVQEDPNH HLCQPTSNNG  360
LGGISSIETV QQNVAAVVGG NKMGRTTSLH RVASLEHLQK RIRGGADSRG TPSN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238245RRSRRRKQ
2240245SRRRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.54830.0cotyledon| epicotyl| flower| hypocotyl| leaf| root| seed coat
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G247100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0932530.0BT093253.1 Soybean clone JCVI-FLGm-24C5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237113.20.0bZIP transcription factor bZIP105
RefseqXP_028226695.10.0light-inducible protein CPRF2-like
SwissprotQ990901e-111CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLA0A445LGN20.0A0A445LGN2_GLYSO; Light-inducible protein CPRF2 isoform A
TrEMBLI1JRM90.0I1JRM9_SOYBN; Uncharacterized protein
STRINGGLYMA03G40730.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41763358
Representative plantOGRP18391639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.21e-63bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]