PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.03G245200.1.p

Common Name

GLYMA_03G245200, LOC100790030

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

GeBP

Protein Properties

Length: 406aa MW: 44614.4 Da PI: 4.7445

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.03G245200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	122	3e-38	107	202	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 lfqrlw++eDei lLqG++d+++++g+s ++d+ fy+++k++++++++k+qlveKirrLKkK+++ +k+ sgke+sf+++hdq +fe+ Glyma.03G245200.1.p 107 LFQRLWTDEDEIELLQGFLDYTSQRGSSHHNDTALFYDQIKSKLQLDFNKNQLVEKIRRLKKKYRNVLNKICSGKEFSFKSAHDQATFEI 196 79************************************************************************************** PP DUF573 92 skkiWg 97 s+kiW Glyma.03G245200.1.p 197 SRKIWS 202 ***6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	8.1E-35	108	202	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MASEQHDAVF REEDMDDDDD ESQEDEEYEE DDDEENVPSP STALAVTVAV PGSAVSNGGG 60 GSPISKPTAT ATTATIVLAD SSDPKRRRLE LIEEKKPPPP LDDSRRLFQR LWTDEDEIEL 120 LQGFLDYTSQ RGSSHHNDTA LFYDQIKSKL QLDFNKNQLV EKIRRLKKKY RNVLNKICSG 180 KEFSFKSAHD QATFEISRKI WSNVTPVGDN SLDDDEINPS RSPNPNLNFS PVILKNETIF 240 RNSTEKKTPK RSRPRSAVKI EPNDGSASNR DHNCISNTTP TATAAATNTT AAAAAGTNNN 300 NCNSGYGNNI PSLIEETVKS CLSPVLKELM AGAMGGGAFG GRGFSLNLNP MPFMNLSFGG 360 GEMVDEKWRK QQILELEVYS KRLELVQDQI KAAMEELRSH GGGGL*

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MASEQHDAVF REEDMDDDDD ESQEDEEYEE DDDEENVPSP STALAVTVAV PGSAVSNGGG  60
GSPISKPTAT ATTATIVLAD SSDPKRRRLE LIEEKKPPPP LDDSRRLFQR LWTDEDEIEL  120
LQGFLDYTSQ RGSSHHNDTA LFYDQIKSKL QLDFNKNQLV EKIRRLKKKY RNVLNKICSG  180
KEFSFKSAHD QATFEISRKI WSNVTPVGDN SLDDDEINPS RSPNPNLNFS PVILKNETIF  240
RNSTEKKTPK RSRPRSAVKI EPNDGSASNR DHNCISNTTP TATAAATNTT AAAAAGTNNN  300
NCNSGYGNNI PSLIEETVKS CLSPVLKELM AGAMGGGAFG GRGFSLNLNP MPFMNLSFGG  360
GEMVDEKWRK QQILELEVYS KRLELVQDQI KAAMEELRSH GGGGL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	84	88	KRRRL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.4098	0.0	cotyledon\| hypocotyl\| root\| seed coat\| somatic embryo\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.03G245200.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003521741.1	0.0	probable transcription factor At5g28040
TrEMBL	I1JRL2	0.0	I1JRL2_SOYBN; Uncharacterized protein
STRING	GLYMA03G40520.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3255	33	65
Representative plant	OGRP3184	10	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	4e-77	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Glyma.03G245200.1.p
Entrez Gene	100790030