PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G240000.1.p
Common NameGLYMA_03G240000, LOC100777413
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 344aa    MW: 38466.4 Da    PI: 6.7821
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G240000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.8e-13149200155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Glyma.03G240000.1.p 149 QRMTHIAVERNRRKQMNEYLSVLRSLMPES---YVQRGDQASIIGGAINFVKELE 200
                          79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.5E-14147204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.40E-13147204No hitNo description
PROSITE profilePS5088815.402148199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-16148212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-10149200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.6E-10154205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MQLGIFRGTH IKIFCMCLPE GERGMALEAV VYPQPQDPFG HGIKDPSYNY NNLLEGGGGN  60
WGYADFNLEK EDRTCVPFLA NQTENYPYGE WNCSPSPPSM LPQLNIASNP QSSETSNTQN  120
NLDSSVSTPA RPKRRRTKSR KNKEEIENQR MTHIAVERNR RKQMNEYLSV LRSLMPESYV  180
QRGDQASIIG GAINFVKELE QRLQFLGAQK EKEAKSDVLF SEFFSFPQYS TSASGGCDNS  240
TAMSEQKSEA QSGIADIEVT MVESHANLKI RSKKRPKQLL KIVSSLHGMR LTILHLNVTT  300
TGEIVLYSLS VKVEEDCKLG SVDEIAAAVY QILDRIQQET ISN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149160RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.366510.0root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G240000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-149AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006577251.10.0transcription factor bHLH94
RefseqXP_028226606.10.0transcription factor bHLH94-like
SwissprotQ9C7T41e-81BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A445LGF10.0A0A445LGF1_GLYSO; Transcription factor bHLH96 isoform A
TrEMBLI1JRF00.0I1JRF0_SOYBN; Uncharacterized protein
STRINGGLYMA03G39990.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-79bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]