PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G228100.1.p
Common NameGLYMA_03G228100, LOC100785068
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 305aa    MW: 35192.1 Da    PI: 8.2143
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G228100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00066161185123
                          EEETTTTEEESSHHHHHHHHHH..T CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                          + C  C+k ++  ++++ H+++  H
  Glyma.03G228100.1.p 161 FYCDLCNKQYKLAMEFEAHLSSydH 185
                          78*****************987555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004431.8E-1864109IPR000467G-patch domain
PROSITE profilePS5017416.80266111IPR000467G-patch domain
PfamPF015852.5E-1667107IPR000467G-patch domain
SuperFamilySSF576676.95E-5145196No hitNo description
PfamPF121711.7E-5161188IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280163185IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEYRRTSGRQ ETGGRDRRQS KREQAYQDSL IEDLSQDFRL PINHRPTENV DLDNVEQASL  60
DTQITSSNIG FKLLQKMGWK GKGLGKDEQG IIEPIKSGIR DPRLGIGKQE EDDFFTAEEN  120
IQRKKLDVEL EETEEHVKKR EVLAEREQKI QTEVQEIRKV FYCDLCNKQY KLAMEFEAHL  180
SSYDHNHRKR FKQMKEMHGS SSRDDRQKRE QQRQEREMAK FAQIADAQKQ QRLQLQQESG  240
SATVPSESKT ATALTDQEQR NTLKFGFSSK GSGSKITFGA KKQNVAKKQN VPISSIFSND  300
SDED*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.234960.0cotyledon| hypocotyl| root| somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G228100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0963740.0BT096374.1 Soybean clone JCVI-FLGm-15D7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003521644.10.0G patch domain-containing protein 8 isoform X2
RefseqXP_028226435.10.0G patch domain-containing protein 8-like isoform X2
TrEMBLI1JR130.0I1JR13_SOYBN; Uncharacterized protein
STRINGGLYMA03G38720.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59772428
Representative plantOGRP637078