PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G225000.1.p
Common NameGLYMA_03G225000, LOC100804665
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 518aa    MW: 57387.7 Da    PI: 8.6468
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G225000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.31.6e-14334379454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           hn  E++RR++iN+++ +L+el+P++      K++Ka++L  A++Y+k L
  Glyma.03G225000.1.p 334 VHNLSEKKRREKINKKMRTLKELIPNC-----NKVDKASMLDDAIDYLKTL 379
                          5*************************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.60E-15328384No hitNo description
PROSITE profilePS5088817.492330379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-19333407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-12334379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-17335390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-16336385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MIQKMFDPSR SGMTRSSSHV ASIYDNDFLE LVWENGEVVV RGGSSNRSRK TNDERIHEDA  60
SINKRTRLNP LLYSLEDHFP PQRDSDMSTS HQSNGQDSCG QSSQSKLHEE FANLLKPVSI  120
GNNHLQQCLP SSPLKKQRTV DSTQTPPTPK VNFSNFSIPA VFLKSTTHQG NSATQQTNNH  180
SSPARMEEII EARKVEQSVK ESHGFQKQTS LTVERSTKLP TPPVDEHSEA VGHNCGVLGI  240
HRSQGQLRCD QTSTSEALIR AKAKAYNNNA NMCHEPLLAS SSVCSLGASN DPNLGLRKHE  300
DTETYLSDND GEPEDMVKQD RDGNRVRRIR NPVVHNLSEK KRREKINKKM RTLKELIPNC  360
NKVDKASMLD DAIDYLKTLK LQLQIMSMGN GLWPLMMLPA ATTAHHMNPQ LGMGFRPPQL  420
PIPPSLSAIT DNRLQMFGCF PNQIPPMPAM PHAPFFPIIA NSATQPHLAN TTNLAEHLAA  480
SLHGNATKLA PPSQVSFQQH SCTSTPTLST PFIFPQK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339344KKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.17730.0cotyledon| leaf| meristem| seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G225000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311290.0KT031129.1 Glycine max clone HN_CCL_180 bHLH transcription factor (Glyma19g40980.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520776.20.0transcription factor PIF3
TrEMBLK7KGH20.0K7KGH2_SOYBN; Uncharacterized protein
STRINGGLYMA03G38391.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133291829
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.29e-29phytochrome interacting factor 3