PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G224700.1.p
Common NameGLYMA_03G224700, LOC100817839
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 542aa    MW: 58772.6 Da    PI: 6.7071
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G224700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.71.6e-30295353259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+rsa+d++v+++ Yeg+Hnh+
  Glyma.03G224700.1.p 295 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRSADDKTVLITSYEGNHNHP 353
                          7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-32279355IPR003657WRKY domain
SuperFamilySSF1182904.18E-27287355IPR003657WRKY domain
PROSITE profilePS5081129.78289355IPR003657WRKY domain
SMARTSM007744.3E-36294354IPR003657WRKY domain
PfamPF031062.2E-26296353IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MPTLTIPIYF FFLFSLCISI SPNTYMDNRH HHREFTFLSS AHFLDHIDPP SIKEMDFFST  60
SSPRDHKNNT SSRDTNDDHY QNRDDQHDTH DRHGSPTRVI DHRVNTGLNL TCASAGVTKA  120
ENGENPETEL SSLESELLRL QEENNKLRNV LDHITKSYTQ LQAQLFIALQ NLPQNMETKI  180
VDPGTSRKLD VVNDASVSDE KTDQDVSVSR SNNAEVMSKT HDHDDPQLTK LLNLGKQACP  240
DAAEDVLDRS SSQSWGSSKL EEQPKTTAEQ LPADQIPLRK ARVSVRARSE APMISDGCQW  300
RKYGQKMAKG NPCPRAYYRC TMAVGCPVRK QVQRSADDKT VLITSYEGNH NHPLPPAATA  360
MANTTSAAAA MLLSGSAASK ESLTNSAGYY SSTIPYASMA TLSASAPFPT ITLDLTQNPN  420
NAAMQLHRVP PGHGGATFPL PLHAAASGGP HLLGHPLFFQ QKLLPPQALM PLLQRQPSSM  480
VETVSAAIAS DPNFTAALAA AISSIIGVPR GGNDGNNNNS GSGAIPGSPQ LPQSCTTFST  540
N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21281357176WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.530110.0cotyledon| hypocotyl| meristem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G224700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150374e-90AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003521621.10.0probable WRKY transcription factor 47 isoform X1
TrEMBLI1JQX70.0I1JQX7_SOYBN; Uncharacterized protein
STRINGGLYMA03G38360.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104392541
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.11e-61WRKY family protein