PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G221900.1.p
Common NameGLYMA_03G221900, LOC100797220
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 267aa    MW: 30272.9 Da    PI: 6.3477
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G221900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.7e-172471148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W+ eEd +l ++v+ +G g+W++ ar  g++R++k+c++rw++yl
  Glyma.03G221900.1.p 24 KGPWSVEEDTILQNYVATHGDGRWNSLARSAGLKRSGKSCRLRWLNYL 71
                         79********************************************97 PP
2Myb_DNA-binding47.73.6e-1577120146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T +E+  +++++ ++G++ W++Iar+++ gRt++++k++w++
  Glyma.03G221900.1.p  77 RGNITLQEQITILELHSRWGNR-WSKIARHLP-GRTDNEIKNYWRT 120
                          7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.0161971IPR017930Myb domain
SuperFamilySSF466891.09E-2921118IPR009057Homeodomain-like
SMARTSM007173.5E-142373IPR001005SANT/Myb domain
PfamPF002497.2E-162471IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-212578IPR009057Homeodomain-like
CDDcd001672.76E-102671No hitNo description
PROSITE profilePS5129422.70972126IPR017930Myb domain
SMARTSM007172.4E-1376124IPR001005SANT/Myb domain
PfamPF002491.7E-1377120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2179123IPR009057Homeodomain-like
CDDcd001671.66E-981120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MDVKVKKSQS IELQVQDCEE DIRKGPWSVE EDTILQNYVA THGDGRWNSL ARSAGLKRSG  60
KSCRLRWLNY LRPDVRRGNI TLQEQITILE LHSRWGNRWS KIARHLPGRT DNEIKNYWRT  120
RVIKQARNLK CDVDSKQFQD ALRYVWMPRL IERTHPSLPI PSETHGPAHV DPNPTAPAQH  180
ELHGSGSGSG PSALEDVSSG AELNAPLDSD SEHLVYDVWG TCDSFNGNST LPLGGGDLME  240
SLWEDENMWL MRQLCHDLEI KDNFLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-222111824120MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaves. Expressed in roots and shoots. Expressed at low levels in flowers. {ECO:0000269|PubMed:22301384}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G221900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150374e-57AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520762.10.0transcription factor MYB2
RefseqXP_028226356.10.0transcription factor MYB2-like
SwissprotQ10MB42e-78MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A445LFH40.0A0A445LFH4_GLYSO; Transcription factor MYB2
TrEMBLK7KGF40.0K7KGF4_SOYBN; Uncharacterized protein
STRINGGLYMA03G38070.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47190.15e-77myb domain protein 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]