PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.03G218200.1.p | ||||||||
Common Name | GLYMA_03G218200, LOC100788260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 360aa MW: 40983.4 Da PI: 4.5522 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.5 | 2e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT+eEd++l ++++ G g+W++ + g+ R++k+c++rw +yl Glyma.03G218200.1.p 14 KGRWTEEEDDILTKYIQANGEGSWRSLPTNSGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 48.9 | 1.5e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + eE+ +++++++ +G++ W++Ia++++ gRt++++k++w+++l Glyma.03G218200.1.p 67 RGNISFEEESIILKLHASFGNR-WSLIASHLP-GRTDNEIKNYWNSHL 112 788899****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-20 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.751 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.12E-27 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.23E-7 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.129 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.97E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MVRAPCCEKV GLKKGRWTEE EDDILTKYIQ ANGEGSWRSL PTNSGLLRCG KSCRLRWINY 60 LRADLKRGNI SFEEESIILK LHASFGNRWS LIASHLPGRT DNEIKNYWNS HLSRKIYTFH 120 GTTSTSKDII ITLPPRRKRG RSSRWAMKKN KQQQIHTTHN NEVAVPLPPT PPLIETEKYL 180 STNIMLMEEQ FDGSSTASTI THQHENNINT TQEEEEEQNV GVEEGEKEEI INEDIWGPCD 240 EEVINGGEVV LNFDDIMDNC YFQEASGVWT ISDHEQRESN DNINVAGNEK GVDDTCTNIV 300 MSSGDDDQLH SSSFMASGLD QNLLTWLWED EDWETDLQSL GEIHSDKLKA MVDWFLSSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-22 | 12 | 116 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 4e-22 | 12 | 116 | 56 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 4e-22 | 12 | 116 | 56 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 2e-22 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 1e-22 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-22 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.03G218200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006577161.1 | 0.0 | transcription factor MYB111 | ||||
TrEMBL | K7KGD6 | 0.0 | K7KGD6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G37640.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 6e-73 | myb domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.03G218200.1.p |
Entrez Gene | 100788260 |