PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.03G209800.2.p | ||||||||
Common Name | GLYMA_03G209800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | DBB | ||||||||
Protein Properties | Length: 255aa MW: 27669.1 Da PI: 4.6217 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.9 | 7.6e-07 | 4 | 48 | 2 | 40 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 e+r C+ +++ + l+C+ ++ lC +C e H+ Ht++ Glyma.03G209800.2.p 4 EARSCDYCGHSTALLYCRADSAKLCFSCDREVHSTnqlfskHTRT 48 5789******99*********************668888888876 PP | |||||||
2 | zf-B_box | 27.9 | 4.8e-09 | 50 | 93 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42 C+ +++ ++++ C ++ + lC++C e+H + H+++pl Glyma.03G209800.2.p 50 LCDACDHSPATILCSTDTSVLCQNCDWEKH-NpalsdslHERRPL 93 7*****************************.54899999988775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.239 | 3 | 50 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 8.3E-15 | 3 | 50 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.0E-5 | 5 | 48 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.28E-6 | 6 | 50 | No hit | No description |
PROSITE profile | PS50119 | 10.125 | 46 | 93 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.46E-5 | 50 | 93 | No hit | No description |
Pfam | PF00643 | 7.7E-7 | 50 | 93 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 0.22 | 51 | 93 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MSGEARSCDY CGHSTALLYC RADSAKLCFS CDREVHSTNQ LFSKHTRTLL CDACDHSPAT 60 ILCSTDTSVL CQNCDWEKHN PALSDSLHER RPLEGFTGCP SVSELLSIVG FSDLSKKSLL 120 SSPQGSGADG IFGGEIEGLS DLFVWDSPSF VTLDDLISSS PSSHSFQAME VPPLPKNRKA 180 ACGQHKEEIL SQLRELAKSE PLDLEPYVSS GNLSSGFERE PEADIFPSHE VKLLLNLFCT 240 CVFLSKLVLM PDDG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.64238 | 0.0 | cotyledon |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.03G209800.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM068896 | 0.0 | HM068896.1 Glycine max CONSTANS-like zinc finger protein (COL15) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001278943.1 | 1e-167 | zinc finger protein CONSTANS-LIKE 13-like | ||||
Refseq | XP_028226195.1 | 1e-167 | zinc finger protein CONSTANS-LIKE 13-like | ||||
Swissprot | O82256 | 2e-68 | COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13 | ||||
TrEMBL | K7KG84 | 0.0 | K7KG84_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G36810.1 | 1e-167 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47890.2 | 6e-67 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Glyma.03G209800.2.p |
Publications ? help Back to Top | |||
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