PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G203300.1.p
Common NameGLYMA_03G203300, LOC106798339
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 403aa    MW: 44628.6 Da    PI: 4.442
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G203300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF26.11.1e-081052143
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                         k+ie+  +r+  + kRr+ +lK  e L +LCd++++  i+++ 
  Glyma.03G203300.1.p 10 KPIEDFVKRKACYRKRREILLKMVEDLTTLCDIDACAFILGPG 52
                         689**********************************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.2E-7261IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.83250IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-15486IPR002100Transcription factor, MADS-box
CDDcd002662.09E-16484No hitNo description
PfamPF003191.6E-91252IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MPRRKKITQK PIEDFVKRKA CYRKRREILL KMVEDLTTLC DIDACAFILG PGDDVPNVWP  60
SHDKAKEMLD KFENAPLSTR LKKNITPQVY IERANNKVEN QLVELRKKND EIDMSDLMHQ  120
IHDDGRSLSD FDASDISRLL SYVEEKLKGV RVKTGFSEQQ LPPKPPTPQV SCPLQNDKID  180
SWDNIDEQVL QQQSFIDDLK EDGKINSGFD NNLGSNIGLP PPNTHVGDVD FEPFNQGYVD  240
MMLPPENFGG LANESGLGFG VLPRDYFIGS NGNNDSELLY GSYYSEIGGN DIWSSYGNFG  300
GKIVGSDDVM LPFNNNSQGN INETCLGIGQ HDENQGGSIN NVGLWNHQIT LGASNDGVAL  360
ERSNPNFVGT TSGENLNLGF PSHANLASSG ERSDIELQEF SP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKITQKPIEDFVKRKACYRKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G203300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014629797.10.0MADS-box transcription factor PHERES 2
TrEMBLA0A0R0KM600.0A0A0R0KM60_SOYBN; Uncharacterized protein
TrEMBLA0A445LEM50.0A0A445LEM5_GLYSO; MADS-box transcription factor PHERES 2
STRINGXP_007162987.11e-138(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15602811
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.13e-19AGAMOUS-like 96