PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.03G203000.1.p

Common Name

GLYMA_03G203000, LOC100527677

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NF-YA

Protein Properties

Length: 329aa MW: 35903.4 Da PI: 8.8308

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.03G203000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	100.2	2e-31	159	215	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep+YVNaKQy++I++RRq+Rak+ ++kl +k rkpy+heSRh hA+rRpRg+gGrF Glyma.03G203000.1.p 159 DEPIYVNAKQYHGIIRRRQSRAKAVLDHKL-TKRRKPYMHESRHLHAMRRPRGCGGRF 215 79**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.5E-35	157	218	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.606	158	218	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.1E-27	160	215	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	5.6E-23	161	183	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	5.6E-23	192	215	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MQTVYLKEHE GNAHNFVGTL SSAASAPWWS AFGSQSVHQG ESCGQVKPFS LELPNCIDQL 60 AATKPLARGA DQVLGKGHIT QFTIFPDDCK MSDDAQKLQT TMSLQSSLTD PQSRFEIGFS 120 LPTICAKYPY TDQFYGLFSA YAPQISGRIM LPLNMTSDDE PIYVNAKQYH GIIRRRQSRA 180 KAVLDHKLTK RRKPYMHESR HLHAMRRPRG CGGRFLNTKN SVDGNGKIGN EVHKTVGEQL 240 QSSGSQSSEF LQSEVGTFNS SKETNGSSPN ISGSEVTSMY SRGGLDSFSL NHLGSAVHSF 300 ADMIDGGRGM IIPTKWVAAA GNCCNLKV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-18	159	219	2	62	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	173	192	RRRQSRAKAVLDHKLTKRRK
2	173	193	RRRQSRAKAVLDHKLTKRRKP
3	174	193	RRQSRAKAVLDHKLTKRRKP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.3584	0.0	hypocotyl\| root

Function -- GeneRIF ? help Back to Top
GmNF-YA1a/b are positive regulators in arbuscular mycorrhiza establishment, whose expression is down-regulated by NARK in the autoregulated root tissue thereby diminishing subsequent infections. [NF-Y1a] [PMID: 23777981]

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.03G203000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT092539	0.0	BT092539.1 Soybean clone JCVI-FLGm-16A23 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001340583.1	0.0	nuclear transcription factor Y subunit A-3
Refseq	XP_003521500.1	0.0	nuclear transcription factor Y subunit A-3 isoform X1
Refseq	XP_014629410.1	0.0	nuclear transcription factor Y subunit A-3 isoform X1
Refseq	XP_028226117.1	0.0	nuclear transcription factor Y subunit A-10-like
Refseq	XP_028226118.1	0.0	nuclear transcription factor Y subunit A-10-like
Refseq	XP_028226119.1	0.0	nuclear transcription factor Y subunit A-10-like
TrEMBL	A0A0B2QM90	0.0	A0A0B2QM90_GLYSO; Nuclear transcription factor Y subunit A-10
TrEMBL	I1JQA1	0.0	I1JQA1_SOYBN; Uncharacterized protein
STRING	GLYMA03G36140.5	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3794	34	64
Representative plant	OGRP5136	11	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.2	2e-53	nuclear factor Y, subunit A10

Link Out ? help Back to Top
Phytozome	Glyma.03G203000.1.p
Entrez Gene	100527677

Publications ? help Back to Top
Schaarschmidt S,Gresshoff PM,Hause B Analyzing the soybean transcriptome during autoregulation of mycorrhization identifies the transcription factors GmNF-YA1a/b as positive regulators of arbuscular mycorrhization. Genome Biol., 2013. 14(6): p. R62 [PMID:23777981]