PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.03G186100.1.p

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 217aa MW: 23959.6 Da PI: 8.4168

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.03G186100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.001	31	53	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Glyma.03G186100.1.p 31 YECKTCNRCFPSFQALGGHRASH 53 99**********99999998887 PP
2	zf-C2H2	14.3	0.00012	126	148	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Glyma.03G186100.1.p 126 HECSICGAEFSSGQALGGHMRRH 148 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.77E-8	30	53	No hit	No description
PROSITE profile	PS50157	9.286	31	58	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.3E-10	31	55	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.14	31	53	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	33	53	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.77E-8	121	148	No hit	No description
Pfam	PF13912	5.7E-13	125	149	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.743	126	148	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.01	126	148	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	128	148	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MANCLILLAQ GDRNNSTPKP SHNNKGGLYL YECKTCNRCF PSFQALGGHR ASHKKYYSKA 60 SAEEKQGVLA TFVNEVDNNN NHNHDNYYCD TTSTTLTLQL STALYNNNNS SSNTRMSTIN 120 AKCKVHECSI CGAEFSSGQA LGGHMRRHRN FGSAPTCGAI NANRESKKHN KDVLNLDLNL 180 PAPEDDHHRE SKLFPFQAKE KVIVFSATSS LVDCHY*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.52367	0.0	root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.03G186100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT093974	0.0	BT093974.1 Soybean clone JCVI-FLGm-18A15 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028225902.1	1e-161	zinc finger protein ZAT5-like
TrEMBL	C6T916	1e-160	C6T916_SOYBN; Uncharacterized protein
STRING	GLYMA03G34320.1	1e-160	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF586	34	141
Representative plant	OGRP2350	10	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	4e-43	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Glyma.03G186100.1.p