PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G179600.1.p
Common NameGLYMA_03G179600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 288aa    MW: 33515.1 Da    PI: 8.8614
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G179600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.53.3e-50111381128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhP+deel+v+yL++kv++++l++ ++i+e+d+yk++Pw+Lp+k+  +e+ewyfF++rd+ky++g r+nr  +sgyWkat +dk
  Glyma.03G179600.1.p  11 LPPGFRFHPSDEELIVHYLRNKVASSPLPA-SFITEIDLYKYNPWELPSKALFGEDEWYFFTPRDRKYPNGVRPNRPDASGYWKATVNDK 99 
                          79****************************.89***************87778999********************999*********** PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++++ + + + +kk Lvfykgr pkg+ktdW+mheyrl
  Glyma.03G179600.1.p 100 PIFTScGMKSIAVKKALVFYKGRPPKGSKTDWIMHEYRL 138
                          ****977788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-608165IPR003441NAC domain
PROSITE profilePS5100558.21611165IPR003441NAC domain
PfamPF023655.8E-2612138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MDKDANIEIQ LPPGFRFHPS DEELIVHYLR NKVASSPLPA SFITEIDLYK YNPWELPSKA  60
LFGEDEWYFF TPRDRKYPNG VRPNRPDASG YWKATVNDKP IFTSCGMKSI AVKKALVFYK  120
GRPPKGSKTD WIMHEYRLHD SMISNSRQRG SMRLDEWVLC RVRQKTISPK SILEDSNEPI  180
YEPTSHFQQM KTYASLHDDN LNKIIIGAQF MAPVAEDLFN PLKRRNIEEN ELDLYAPLNK  240
KPREVVDLGK QRLEKDVNKG YNFNNFDQWT SIMQPQELNS LAFTKYA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-6621708170NO APICAL MERISTEM PROTEIN
1ut4_B9e-6621708170NO APICAL MERISTEM PROTEIN
1ut7_A9e-6621708170NO APICAL MERISTEM PROTEIN
1ut7_B9e-6621708170NO APICAL MERISTEM PROTEIN
3swm_A1e-65217011173NAC domain-containing protein 19
3swm_B1e-65217011173NAC domain-containing protein 19
3swm_C1e-65217011173NAC domain-containing protein 19
3swm_D1e-65217011173NAC domain-containing protein 19
3swp_A1e-65217011173NAC domain-containing protein 19
3swp_B1e-65217011173NAC domain-containing protein 19
3swp_C1e-65217011173NAC domain-containing protein 19
3swp_D1e-65217011173NAC domain-containing protein 19
4dul_A9e-6621708170NAC domain-containing protein 19
4dul_B9e-6621708170NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed at the base of the inflorescence meristem and at late stages of development in petals and stamens. Up-regulated during leaf senescence. {ECO:0000269|PubMed:16640597, ECO:0000269|PubMed:9489703}.
UniprotTISSUE SPECIFICITY: Expressed in senescing leaves, petals and sepals. {ECO:0000269|PubMed:16640597}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to, and transactivates the promoter of the abscisic aldehyde oxidase AAO3. Promotes chlorophyll degradation in leaves by enhancing transcription of AAO3, which leads to increased levels of the senescence-inducing hormone abscisic acid (ABA) (PubMed:25516602). Involved in the control of dehydration in senescing leaves. Binds to the DNA sequence 5'-CACGTAAGT-3' of SAG113 promoter. SAG113 acts as negative regulator of ABA signaling for stomatal closure in leaves, and controls water loss during leaf senescence (PubMed:22184656). Transcription factor of the NAC family involved in senescence. May function in the transition between active cell division and cell expansion (PubMed:16640597). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:16640597, ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:22184656, ECO:0000269|PubMed:25516602}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G179600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by the heterodimer APETALA3 (AP3)/PISTILLATA (PI) (PubMed:9489703). Induced by senescence (PubMed:22184656, PubMed:24659488, PubMed:25516602). Induced by abscisic acid (ABA) (PubMed:22184656, PubMed:25516602). Induced by ethylene (PubMed:25516602). {ECO:0000269|PubMed:22184656, ECO:0000269|PubMed:24659488, ECO:0000269|PubMed:25516602, ECO:0000269|PubMed:9489703}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354605e-97AC235460.1 Glycine max strain Williams 82 clone GM_WBb0169H15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553546.20.0NAC transcription factor 25 isoform X2
RefseqXP_028215986.10.0NAC domain-containing protein 2-like
SwissprotO492553e-78NAC29_ARATH; NAC transcription factor 29
TrEMBLA0A0R0KL370.0A0A0R0KL37_SOYBN; Uncharacterized protein
STRINGGLYMA03G33690.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24162981
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-80NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Zhang K,Gan SS
    An abscisic acid-AtNAP transcription factor-SAG113 protein phosphatase 2C regulatory chain for controlling dehydration in senescing Arabidopsis leaves.
    Plant Physiol., 2012. 158(2): p. 961-9
    [PMID:22184656]
  2. Zhang K,Halitschke R,Yin C,Liu CJ,Gan SS
    Salicylic acid 3-hydroxylase regulates Arabidopsis leaf longevity by mediating salicylic acid catabolism.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(36): p. 14807-12
    [PMID:23959884]
  3. Shinozaki Y, et al.
    Expression of an AtNAP gene homolog in senescing morning glory (Ipomoea nil) petals of two cultivars with a different flower life span.
    J. Plant Physiol., 2014. 171(8): p. 633-8
    [PMID:24709156]
  4. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  5. Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC
    Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription.
    Plant Cell Rep., 2016. 35(1): p. 155-66
    [PMID:26441053]
  6. Seok HY, et al.
    Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response.
    Planta, 2017. 245(2): p. 329-341
    [PMID:27770200]