PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G179000.1.p
Common NameGLYMA_03G179000, LOC100499820
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family S1Fa-like
Protein Properties Length: 90aa    MW: 9753.52 Da    PI: 10.5601
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G179000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA134.72.3e-422689770
                 S1FA  7 eakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                          +kG+nPGlivllvvgglll+fl+gny+ly yaqk+lPPrkkkPvskkk+k+e+lkqGv++PGe
  Glyma.03G179000.1.p 26 GSKGFNPGLIVLLVVGGLLLTFLIGNYVLYSYAQKTLPPRKKKPVSKKKMKKERLKQGVSAPGE 89
                         57*************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190139.0E-62289No hitNo description
PfamPF046898.7E-412689IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MADDFDFADK VPPSFDRVGN VIKDSGSKGF NPGLIVLLVV GGLLLTFLIG NYVLYSYAQK  60
TLPPRKKKPV SKKKMKKERL KQGVSAPGE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.557271e-152cotyledon| hypocotyl| meristem| root| somatic embryo
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G179000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0897161e-149BT089716.1 Soybean clone JCVI-FLGm-2N13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003521381.13e-57DNA-binding protein S1FA
RefseqXP_028225807.13e-57DNA-binding protein S1FA-like
SwissprotQ7XLX61e-16S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBLA0A445LDF56e-56A0A445LDF5_GLYSO; DNA-binding protein S1FA2
TrEMBLC6SX226e-56C6SX22_SOYBN; Uncharacterized protein
STRINGGLYMA03G33640.11e-56(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54093355
Representative plantOGRP50951322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09735.14e-08S1FA-like DNA-binding protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]