PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G170300.4.p
Common NameGLYMA_03G170300, Glyma03g32747.2
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 503aa    MW: 55039.8 Da    PI: 6.2377
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G170300.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.51.5e-15297343455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+ Y+ksLq
  Glyma.03G170300.4.p 297 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAISYLKSLQ 343
                          6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-20291357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.076293342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.55E-17296347No hitNo description
Gene3DG3DSA:4.10.280.102.7E-20297351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-13297343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-18299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MDHDHEYPIL TPSALPRQKK PSIADDDIME LLWHNGQVVV QSQNQRSLRK LPPVTNSHDA  60
SPAGPSMTRE IRPLVENFNQ HLFMHEGEMA SWLHYPIDDD EPALDQSFGA DFLYSPPTTA  120
NNSSFMQTLG HTSQLTELRP MSANPRPPIP PPRRPEQRTP NFAYFSRHNT RAAEPSVKAA  180
ARESTVVDSC DTEAAASRVS ETVRSAAEGG AGVAAPSTSA GGGRSTMMYD LTMTSSPGGS  240
SSCDEPVQVA AAEEDRKRKG REAEEWECQS EDVDFESEAK KQVCGSTSTK RSRAAEVHNL  300
SERRRRDRIN EKMKALQELI PRCNKSDKAS MLDEAISYLK SLQLQVQMMS MGCGMVPVMF  360
PGIQQYMPAM GMGVGMGMGM EMGMNRPVMP FPNMLPGSAL PAATAAAAHL GPRFSMPPFH  420
MPHVPAPDSS RMQAANQSDN NMVTSAGPPD PNQSRIPNFT DPYQQYLGPH QMQFQLIQNQ  480
AMNQPNVSKP SNNGGPANPE NH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1301306ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.191230.0flower| leaf| root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G170300.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311020.0KT031102.1 Glycine max clone HN_CCL_196 bHLH transcription factor (Glyma03g32747.2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003521328.10.0transcription factor PIF1 isoform X1
RefseqXP_006576978.10.0transcription factor PIF1 isoform X1
TrEMBLK7KFM10.0K7KFM1_SOYBN; BHLH transcription factor
STRINGGLYMA03G32747.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.31e-76phytochrome interacting factor 3-like 5
Publications ? help Back to Top
  1. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]