PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G163100.1.p
Common NameGLYMA_03G163100, LOC100775603
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 295aa    MW: 33522.3 Da    PI: 4.9742
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G163100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding506.6e-161461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT+eEd++l+++++ +   +W++ ++  g+ R++k+c++rw +yl
  Glyma.03G163100.1.p 14 RGPWTPEEDQILINYINTYDHANWRALPKLAGLLRCGKSCRLRWINYL 61
                         89******************************99************97 PP
2Myb_DNA-binding50.54.7e-1667112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T eE++ ++ ++++lG++ W++Ia++++ gRt++++k+ w+++l
  Glyma.03G163100.1.p  67 RGNFTREEEDTIISLHEMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112
                          89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-24564IPR009057Homeodomain-like
PROSITE profilePS5129413.707961IPR017930Myb domain
SuperFamilySSF466891.31E-2910108IPR009057Homeodomain-like
SMARTSM007173.3E-131363IPR001005SANT/Myb domain
PfamPF002492.2E-141461IPR001005SANT/Myb domain
CDDcd001673.26E-101661No hitNo description
PROSITE profilePS5129425.11562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-2665116IPR009057Homeodomain-like
SMARTSM007172.8E-1466114IPR001005SANT/Myb domain
PfamPF002494.0E-1567112IPR001005SANT/Myb domain
CDDcd001673.01E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGRAPCCEKM GLKRGPWTPE EDQILINYIN TYDHANWRAL PKLAGLLRCG KSCRLRWINY  60
LRPDIKRGNF TREEEDTIIS LHEMLGNRWS AIAARLPGRT DNEIKNVWHT HLKKRLPQNY  120
KQSHDQKKRS KKQPKLDVDA SKSNQDAKLE QQQEPVNNNF PFHASNSEDM MPLSPPQCSS  180
HMSSSSLTTS DNNGSINNNH DMSLNVNDDI DTPENNLALD EDFWSEVLSS DNSGETTSGF  240
PTIDYDHQFL PMSPLMTEEG VLIDASSSSV CDDGMDFWCN VYARAEEFTQ LLEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26121165108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Fades out in old roots and leaves. {ECO:0000269|PubMed:24415840}.
UniprotTISSUE SPECIFICITY: Expressed in imbibed seeds, hypocotyls, cotyledons, roots, seedlings, siliques and flowers. {ECO:0000269|PubMed:24415840}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Function -- GeneRIF ? help Back to Top
  1. CND is a Myb transcription factor involved in root nodule formation. [CND]
    [PMID: 19755542]
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G163100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9791360.0KC979136.1 Glycine max cultivar Jindou 21 MYB4-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003521289.10.0transcription factor MYB14
RefseqXP_028225585.10.0transcription factor MYB14-like
SwissprotQ9SJX81e-83MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A445LD090.0A0A445LD09_GLYSO; Transcription factor MYB14
TrEMBLI1JP370.0I1JP37_SOYBN; Uncharacterized protein
STRINGGLYMA03G31980.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-83myb domain protein 14
Publications ? help Back to Top
  1. Libault M, et al.
    Large-scale analysis of putative soybean regulatory gene expression identifies a Myb gene involved in soybean nodule development.
    Plant Physiol., 2009. 151(3): p. 1207-20
    [PMID:19755542]
  2. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]