PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.03G162700.1.p | ||||||||
Common Name | GLYMA_03G162700, LOC100779524 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 243aa MW: 27302.5 Da PI: 5.4756 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.3 | 1.6e-17 | 107 | 156 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+++AeIrd + ng r+++g+f+tae Aa a+++a+ + +g Glyma.03G162700.1.p 107 YRGVRKRP-WGKFAAEIRDSTRNG--VRVWIGTFDTAEAAALAYDQAAFSTRG 156 9*******.**********44465..**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.721 | 106 | 164 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-21 | 106 | 165 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.6E-35 | 106 | 170 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-29 | 106 | 165 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.9E-12 | 107 | 156 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-10 | 107 | 118 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.97E-19 | 107 | 165 | No hit | No description |
PRINTS | PR00367 | 2.2E-10 | 130 | 146 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MDLDFDSTFF LNQNLSFFPE NSSIFGDTFS WDYNFVLDDI FNNLSDNSSQ SQTKETSSAS 60 NVSSCIGSVE LQEVSSNTTY KEVKKVRPPP PSPPLPSQQV AKEPRMYRGV RKRPWGKFAA 120 EIRDSTRNGV RVWIGTFDTA EAAALAYDQA AFSTRGSLAV LNFPEEVVRE SLKDMPSKPW 180 EEGSSPVLAL KRKHTMRTKS NSKKKTKVDQ REQLDFSRTS QNVLVFEDLG AEYLEQLLTL 240 TS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-28 | 97 | 166 | 5 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.03G162700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003520600.1 | 1e-179 | ethylene-responsive transcription factor 15 | ||||
Refseq | XP_028225581.1 | 1e-179 | ethylene-responsive transcription factor 15-like | ||||
Swissprot | Q8VYM0 | 6e-54 | ERF93_ARATH; Ethylene-responsive transcription factor 15 | ||||
TrEMBL | A0A445LCA0 | 1e-177 | A0A445LCA0_GLYSO; Ethylene-responsive transcription factor 15 | ||||
TrEMBL | I1JP31 | 1e-177 | I1JP31_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G31940.1 | 1e-178 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF311 | 33 | 199 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31230.1 | 7e-47 | ethylene-responsive element binding factor 15 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.03G162700.1.p |
Entrez Gene | 100779524 |
Publications ? help Back to Top | |||
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