PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G161800.3.p
Common NameGLYMA_03G161800, LOC100776869
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 743aa    MW: 82736.4 Da    PI: 6.17
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G161800.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.30.000165696061355
                          HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          R+ i +++ eLrel+P+ a      K s  + Le+A++++  Lq
  Glyma.03G161800.3.p 569 RQLIQDRIKELRELVPNgA------KCSIDSLLERAIKHLLFLQ 606
                          67799************77......777778*********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.5E-335152IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000830.00203549606No hitNo description
PROSITE profilePS5088810.931556605IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-4569610IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-5569611IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0035556Biological Processintracellular signal transduction
GO:0005829Cellular Componentcytosol
GO:0004674Molecular Functionprotein serine/threonine kinase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MGTNLHQVLR SLCLNTHWNY AIFWKLKHRA RMILTWEDAY YSNPDDYDSS ENKHCQKTLE  60
QIGCGKFSHS ALELAVAKMS YHAYSLGEGI IGQVAVTGKH RWICADNQVA GSGLSFETIA  120
VVAVVPLGVV QLGSLNKVIE DMEFVTHIRN LFLSTQNYSI LRPSQIQGSL KSSSELDTLK  180
ENLSSDIMPT CFYDTQKSMK SETADVLMPL QCSGTGRNYT PSAHEKMSDN VAKQEGPELY  240
NDESSILLQS ISNMMNVDCK EFEEMKPLYG MKYEGGSSGD CKDMRLESEK NVSSYLNDFV  300
TDNASFNDLI CPSEKVRVDS ACFPSVFLDT VVCESDKLHY ADINQKGALN FAQPSEANSQ  360
QHIEKSKFHT EPCYKDISDF QTEPCYKDAS QMLNFPAGCE LHEALGPAFS KVGKCFDWPT  420
QVNQEMKPVE MSDEISTSQL TSESCPEHLL EAMLVNINHS NNDVNSELSF CTSKQSAMAS  480
AKNHEASIHN VHTINSEGYL MDQLSLVRED KHHSLSSSSG ICGVMSSKGV SSTFHSSNSG  540
QLERSSEPSK NSKKRARPGE SCRPRPRDRQ LIQDRIKELR ELVPNGAKCS IDSLLERAIK  600
HLLFLQSITK HADKLTDFAD TKSKLHHKEA DILGSSSYDQ GSSWAMEVGG HLKVHSILVE  660
NLGKNGQMLV EMLCEECSHF LEIAEAIRSL GLTILKGATK AHGEKIWICF VVEGQNNKNV  720
HRLDILWPLV QILQSKSTVY SQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.613930.0root| somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G161800.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014629310.10.0transcription factor EMB1444 isoform X4
RefseqXP_028225577.10.0transcription factor EMB1444-like isoform X4
TrEMBLA0A0R0KRS90.0A0A0R0KRS9_SOYBN; Uncharacterized protein
TrEMBLA0A445LCD50.0A0A445LCD5_GLYSO; Transcription factor EMB1444 isoform C
STRINGGLYMA03G31876.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.11e-131conserved peptide upstream open reading frame 7