PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.03G159800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 173aa MW: 19347.2 Da PI: 10.2897 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.8 | 7.6e-20 | 21 | 70 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIr+ ++ ++r +lg+f+taeeAa+a++aa++ l+g Glyma.03G159800.1.p 21 HFRGVRKRP-WGRFAAEIREpWK----KTRKWLGTFDTAEEAARAYDAAARTLRG 70 69*******.**********883....5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.92E-17 | 20 | 77 | No hit | No description |
Pfam | PF00847 | 3.6E-13 | 21 | 70 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-30 | 21 | 78 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.55 | 21 | 78 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.02E-22 | 21 | 79 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.2E-34 | 21 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-10 | 22 | 33 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-10 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MPVHALPFSK DSPPPKPKEA HFRGVRKRPW GRFAAEIREP WKKTRKWLGT FDTAEEAARA 60 YDAAARTLRG PKAKTNFSYI LAPAFHLPPP VLTTPEAHAL AQAQAQEQLA RQVEFCGPPF 120 FFATDVASTA PVRSEYKGYK LENIAGFVVS KEEQKEKNKP FLFDLNLPAP LF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-18 | 18 | 77 | 2 | 62 | ATERF1 |
3gcc_A | 3e-18 | 18 | 77 | 2 | 62 | ATERF1 |
5wx9_A | 5e-18 | 22 | 77 | 15 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.03G159800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003520585.1 | 1e-122 | ethylene-responsive transcription factor 12 | ||||
TrEMBL | A0A0R0KRT7 | 1e-121 | A0A0R0KRT7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G31640.2 | 1e-122 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 6e-20 | ERF domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.03G159800.1.p |