PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G143600.1.p
Common NameGLYMA_03G143600, LOC100527257
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 428aa    MW: 47712.5 Da    PI: 7.5797
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G143600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.21.4e-31239293155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k+r+rWt++LHe+Fve+v++LGG+e+AtPk+il++m+ +gLt+ hvkSHLQkYR+
  Glyma.03G143600.1.p 239 KTRIRWTKDLHEKFVECVNRLGGAEQATPKAILKMMNTDGLTIFHVKSHLQKYRI 293
                          68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.77236296IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-28237294IPR009057Homeodomain-like
SuperFamilySSF466892.15E-17237293IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-23239294IPR006447Myb domain, plants
PfamPF002491.5E-9243292IPR001005SANT/Myb domain
PfamPF143791.1E-19337384IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MNENKIDWGG LIQQSHVLSG DFNSEFGNRY CQYFDIRQAW NMGPLAMVGG EAIDNELQNI  60
GHAKSSGTIM SRFESPASAF YAAENCMEFA EYDCQVGIHS LSSQLCKIND LEFPLYQSPR  120
ENLFLDSANQ SETNFDLSNT LQSIVKSQLN SANQCSRSPE KSNKISCGNF HSTKFLPVEQ  180
QKLFIDGLIS GSSFPNKGNQ DHMLRFSSQI ERLSPTLSAG SVSTIGNSAS NVAAVVSSKT  240
RIRWTKDLHE KFVECVNRLG GAEQATPKAI LKMMNTDGLT IFHVKSHLQK YRIAKFIPEP  300
SHGSFPILNL KNCPVSGKSD KRTHTKDVHH LDVKTGIQIR EALKLQLDAQ RCLHEQLEIQ  360
RKLQLRIEEQ GRQLKKMFDQ QQKTSNDVSN TQNSTIEETS ISHKDGENAS EGANNNSFFP  420
SKTSPSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-23239296259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-23239296259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-23239296158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-23239296158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-23239296158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-23239296158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-23239296259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-23239296259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-23239296259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-23239296259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-23239296259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-23239296259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.248390.0cotyledon| root| seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G143600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN2015260.0JN201526.1 Glycine max PHR1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001341594.10.0MYB-CC domain-containing transcription factor PHR8 isoform 1
RefseqXP_028225379.10.0uncharacterized protein LOC114406770 isoform X1
TrEMBLI1JNJ70.0I1JNJ7_SOYBN; Uncharacterized protein
STRINGGLYMA03G29940.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37403465
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.11e-63G2-like family protein