PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.03G143500.1.p | ||||||||
Common Name | GLYMA_03G143500, LOC102668008 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | G2-like | ||||||||
Protein Properties | Length: 372aa MW: 42517.1 Da PI: 8.2649 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 76.1 | 4.5e-24 | 223 | 277 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r++Wt++LHe F+ v++LGG+ekA Pk+il++mk + L+++hvkSHLQk R+ Glyma.03G143500.1.p 223 KRRIKWTKDLHEPFMMIVNSLGGPEKAKPKAILDMMKSDLLSISHVKSHLQKCRS 277 689*************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.4E-21 | 221 | 278 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.73E-11 | 222 | 278 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.7E-18 | 223 | 277 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MYQYSSQLYG TEWESYMGIS NLDKVVGSEQ LSFEPTKSPF NIVTTPLQIT PPGFCASAIK 60 SLVSFQAQQQ QQHAHHQHQI EVPAAWCFEF PKTTTTTDTH MVMNNICQAS GDNFTTKQDR 120 PSSQFTSSFL SSSGADCRSS SEKYCKIASY SEEKHSSIQP DSIQYYDLYS QEDDKLLRDD 180 AATDEGPLEI SFQRNQLDSC TKREKQAPHR TCGVACVASR RGKRRIKWTK DLHEPFMMIV 240 NSLGGPEKAK PKAILDMMKS DLLSISHVKS HLQKCRSTIH MHKALQERSE KGQRTNGVSE 300 LQVKIHMQIE ESRQLQLEIR RNICQQLKMQ RNLHTLIQEQ SQQLKVMLDY QKERTKLEKT 360 PYTELEATVP K* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-15 | 222 | 277 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-15 | 222 | 277 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-15 | 222 | 277 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-15 | 222 | 277 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-15 | 222 | 277 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-15 | 222 | 277 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-15 | 222 | 277 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-15 | 222 | 277 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.03G143500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006576853.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 3 | ||||
Refseq | XP_028225378.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 3-like | ||||
TrEMBL | A0A445LC56 | 0.0 | A0A445LC56_GLYSO; Myb family transcription factor PHL5 | ||||
TrEMBL | K7KF19 | 0.0 | K7KF19_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G29935.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14490 | 10 | 16 | Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.1 | 9e-33 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.03G143500.1.p |
Entrez Gene | 102668008 |