PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.03G143100.1.p | ||||||||
Common Name | GLYMA_03G143100, LOC100780949 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SBP | ||||||||
Protein Properties | Length: 368aa MW: 39304.6 Da PI: 8.9538 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 127.9 | 3.8e-40 | 69 | 153 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTS........SEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCs........rfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegCe+dls+ak+y++rhkvC +hsk+p+v+v+gl+qrfCqqCs rfh+l efD++krsCrrrLa+hnerrrk+ Glyma.03G143100.1.p 69 RCQVEGCEVDLSNAKTYYSRHKVCGMHSKSPTVIVAGLQQRFCQQCSselilaapRFHQLPEFDQGKRSCRRRLAGHNERRRKPP 153 6*********************************************9888888889***************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.8E-33 | 63 | 139 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 29.299 | 67 | 152 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.75E-38 | 68 | 157 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.6E-29 | 70 | 151 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:2000025 | Biological Process | regulation of leaf formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MASDAKLSSS ESLNGLKFGQ KIYFEDVGFA TPATSLTSSA TTATTVTSSS SSSSRKGRGG 60 SVQPAQPPRC QVEGCEVDLS NAKTYYSRHK VCGMHSKSPT VIVAGLQQRF CQQCSSELIL 120 AAPRFHQLPE FDQGKRSCRR RLAGHNERRR KPPPSSLLTS RYARLSSSAF DHSGRGGNFL 180 MELASYPKLS LRNSLPTPRS SELAPGNQTS TLSWHGNSET SSDLFLQGSV GGTSFAGPGH 240 PPGESYTGVT TSSCALSLLS NQTWGSRNPA PSLGLNNMVN FHGTPMTQPA ASSHGASIHQ 300 LPNTPWCFKG IDSGNCSPEG VPDLGLGQIS QPLSSQLHGE LDLSQQGRRH YMDLEQSRAY 360 ESAHWSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-29 | 70 | 151 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.63084 | 0.0 | leaf |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00307 | DAP | Transfer from AT2G42200 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.03G143100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006576852.1 | 0.0 | squamosa promoter-binding-like protein 9 isoform X1 | ||||
Refseq | XP_028225372.1 | 0.0 | squamosa promoter-binding-like protein 9 isoform X1 | ||||
TrEMBL | A0A445LCU8 | 0.0 | A0A445LCU8_GLYSO; Squamosa promoter-binding-like protein 9 isoform A | ||||
TrEMBL | K7KF17 | 0.0 | K7KF17_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G29901.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4208 | 33 | 59 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 3e-65 | squamosa promoter binding protein-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.03G143100.1.p |
Entrez Gene | 100780949 |