PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G141700.2.p
Common NameGLYMA_03G141700, LOC100814652
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 388aa    MW: 42864.6 Da    PI: 9.9806
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G141700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12315360655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR ri +++ +L+el+P+     +k  s ae+L +A +YIk+Lq
  Glyma.03G141700.2.p 315 SIAERVRRTRISERIRKLQELVPTM----DKQTSTAEMLDLALDYIKDLQ 360
                          689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.199309359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-16312376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.01E-11313362No hitNo description
Gene3DG3DSA:4.10.280.106.5E-14314372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-9315360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-11315365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MDSNSRYHVQ QQHQQPNSGL LRFRSAPTAN FKQQGEVAAN TNGNAWEGSE PFLRFLNSGD  60
THDTTSSPTL REFVDNKVSN NSKPAKESSA SSPLSRMNSQ QGYSASMLPS RSTVTSAMML  120
GSMGIDQSAK SFDSNSLRQS SFPAGHFSNN ISFQNGYDAM KGVGNYSGVN GNDGELSLSM  180
NRMKNHISFS SISPSSSLGM LSPTSKMGTE GIRVTRPEDG RQGSCNGDAR YYGPGFPYAS  240
WNEPSHPKRQ RSSNDELLFD SQNGEPGNQV QRLSHHLSLP RTSSEMFAMD NLLQFSDSVP  300
CKIRAKRGFA THPRSIAERV RRTRISERIR KLQELVPTMD KQTSTAEMLD LALDYIKDLQ  360
KQFKTLSDKR AKCKCINMQK SEADRVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.56430.0cotyledon| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G141700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003521194.10.0transcription factor bHLH130
RefseqXP_006576845.10.0transcription factor bHLH130
RefseqXP_006576846.10.0transcription factor bHLH130
RefseqXP_006576847.10.0transcription factor bHLH130
RefseqXP_028225348.10.0transcription factor bHLH130-like
RefseqXP_028225349.10.0transcription factor bHLH130-like
RefseqXP_028225350.10.0transcription factor bHLH130-like
TrEMBLA0A445LC150.0A0A445LC15_GLYSO; Transcription factor bHLH130 isoform A
TrEMBLI1JNH20.0I1JNH2_SOYBN; Uncharacterized protein
STRINGGLYMA03G29750.60.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-62bHLH family protein