PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G141200.1.p
Common NameGLYMA_03G141200, LOC100814124
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 401aa    MW: 44097.6 Da    PI: 5.8297
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G141200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.5e-09216263455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++iN ++  L+el+P +    +k    a++L + +++++sLq
  Glyma.03G141200.1.p 216 SHSLAERARREKINARMKLLQELVPGC----DKISGTAMVLDEIINHVQSLQ 263
                          8*************************9....78899***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.31E-9210267No hitNo description
SuperFamilySSF474594.45E-15210281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.653212262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-15213280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-7216263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-9218268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MDQAPGGLRG SVHDGATLES IQFNEEIQGI MAPVPAPENA NSFTALLELP PTQAVELLHS  60
PESDSARKPP NCHVSANQKP YLPNSFGSNL TFPSNAALIE RAAKFSVFAG ENSPLPPEEA  120
CLVPAGTGSV SNLDRVKNEP QETDSNPCSS SRLGCISDPA VENNNQRTAK RKEREKKLTV  180
KGSSKKSKSI ADETSGDGEK LPYVHVRVRR GQATDSHSLA ERARREKINA RMKLLQELVP  240
GCDKISGTAM VLDEIINHVQ SLQRQVEILS MKLAAVNPRI DFSLDSLLAT DGASLMDNNL  300
PSMVTPLMWP EIPLNGNRQH YQQQWQLDAF HQPLWEREEV NHNFMTPENS LLSYDSSANS  360
AAVQPVYIVV LPSDPLSSTM RHCFLRWTKE YGDQTLELTR *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.344840.0hypocotyl| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G141200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ6172390.0FJ617239.1 Glycine max bHLH transcription factor PTF1 (PTF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014629257.10.0transcription factor bHLH48 isoform X1
RefseqXP_028225344.10.0transcription factor bHLH48-like isoform X1
SwissprotQ8VZ026e-94BH048_ARATH; Transcription factor bHLH48
TrEMBLI1JNG50.0I1JNG5_SOYBN; Uncharacterized protein
STRINGGLYMA03G29710.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49852945
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.21e-101bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]