PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.03G136100.2.p | ||||||||
Common Name | GLYMA_03G136100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | AP2 | ||||||||
Protein Properties | Length: 409aa MW: 45450.9 Da PI: 9.6106 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.2 | 3.6e-17 | 61 | 120 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n+ k+ k+++lg ++ +e Aa+a++ a++k++g Glyma.03G136100.2.p 61 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 120 57*******************766644468557*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.25E-17 | 61 | 129 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.0E-13 | 61 | 120 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.7E-26 | 62 | 134 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-15 | 62 | 129 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.126 | 62 | 128 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-5 | 63 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-5 | 110 | 130 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence Send to blast |
MASSSSDPGK SAETSEAAAL AVANDQLLLY RGLKKAKKER GCTAKERISK MPPCAAGKRS 60 SIYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQVYLGA YDDEEAAARA YDLAALKYWG 120 PGTLINFPVT DYARDLEEMQ NVSREEYLAS LRRKSSGFSR GLAKYRGLSS RWDPTYGRMS 180 GSDYFNSMHY GDDSAAESEY VSGFCLDRKI DLTSHIKWWG SNKSRHSDAG TRLSEEKKLG 240 SAGDVCSELK QLEQKVQPME PYQMPQLGRL HNEKKHRSSS LSALSILSQS AAYKSLQEKA 300 SKRQENSTDN DENENKNTIN KLDHGKAVEK PSNHDGGNDR LNIAMGMSGT MSLQRNAYPL 360 TPFLSAPLLT AYNTVDPLVD PVLWTSLVPM LPAGLSRTAE RKSNPMAV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.39446 | 0.0 | stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.03G136100.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031074 | 0.0 | KT031074.1 Glycine max clone HN_CCL_189 AP2-EREBP transcription factor (Glyma03g29240.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006576817.1 | 0.0 | AP2-like ethylene-responsive transcription factor At2g41710 isoform X2 | ||||
Refseq | XP_028225287.1 | 0.0 | AP2-like ethylene-responsive transcription factor At2g41710 isoform X1 | ||||
Swissprot | Q8GWK2 | 1e-161 | AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710 | ||||
TrEMBL | K7KEV3 | 0.0 | K7KEV3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G29240.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41710.1 | 1e-156 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.03G136100.2.p |