PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.03G127600.1.p | ||||||||
Common Name | GLYMA_03G127600, LOC100780071 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bZIP | ||||||||
Protein Properties | Length: 461aa MW: 50928 Da PI: 7.716 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30.3 | 9.4e-10 | 173 | 215 | 3 | 45 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 + k rr+++NReAAr+sR+RKka++++Le +L++ ++L Glyma.03G127600.1.p 173 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 215 568899************************9777777666544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 5.1E-8 | 166 | 218 | No hit | No description |
SMART | SM00338 | 1.5E-7 | 171 | 240 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.415 | 173 | 217 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.0E-7 | 175 | 218 | No hit | No description |
CDD | cd14708 | 2.84E-21 | 175 | 227 | No hit | No description |
Pfam | PF00170 | 8.3E-7 | 175 | 215 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 178 | 193 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 7.4E-30 | 258 | 332 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 461 aa Download sequence Send to blast |
MGSRSRTVNV NTKDTDKVLN GMPSYAPPLP SSSNSMAMEA TNAHPSRISE FGTLEQSLGF 60 RVEDTINLSR NPMFNQMKSN SQALGADIQF GALNKSIATS DINLSAAIAA SQALVFQKDS 120 QPTLASTSAG RENWGETNMA DASPRTDTST DDTEDKNQRP ERDESSGSKD KSDQKTLRRL 180 AQNREAARKS RLRKKAYVQQ LESSRLKLTQ LEQELQRSRQ QGIFISSTGD QAQSMSGNGA 240 MAFDVEYARW LEEHNRQTNE LRAAINSHAG DIELRTIVDN FMTQFDDIFR LKGIAAKADV 300 FHILSGMWKT PAERCFMWIG GFRSSELLKL LLSQLEPLAE QQLMGIYNLQ QSSQQTEDAL 360 SQGMDALQQS LSETLANGSP SSSGSSGNVA NYMGQMAMAM GKLGTLEGFL HQADNLRQQT 420 LQQMLRILTT RQSARALLAI SDYFSRLRAL SSLWLARPRE * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.7757 | 0.0 | cotyledon| flower| hypocotyl| leaf| root| seed coat| somatic embryo| stem| vegetative bud |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.03G127600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF402609 | 0.0 | AF402609.1 Phaseolus vulgaris TGA-type basic leucine zipper protein TGA2.2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006576781.1 | 0.0 | transcription factor TGA2.3 isoform X2 | ||||
Refseq | XP_028225197.1 | 0.0 | transcription factor TGA2.3-like isoform X1 | ||||
Swissprot | O24160 | 0.0 | TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1 | ||||
TrEMBL | A0A445LAS6 | 0.0 | A0A445LAS6_GLYSO; TGACG-sequence-specific DNA-binding protein TGA-2.1 isoform A | ||||
TrEMBL | I1JN50 | 0.0 | I1JN50_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G28320.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1470 | 34 | 94 | Representative plant | OGRP722 | 16 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12250.2 | 1e-133 | TGACG motif-binding factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.03G127600.1.p |
Entrez Gene | 100780071 |