PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G116700.1.p
Common NameGLYMA_03G116700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 288aa    MW: 32179 Da    PI: 5.7898
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G116700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-18114164256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+GVr +  +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g+
  Glyma.03G116700.1.p 114 TYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKGH 164
                          69****998.**********843...6***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-22114172IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.7E-32114172IPR001471AP2/ERF domain
PROSITE profilePS5103223.261114171IPR001471AP2/ERF domain
PfamPF008475.3E-13114164IPR001471AP2/ERF domain
SMARTSM003808.9E-37114177IPR001471AP2/ERF domain
CDDcd000189.64E-33115173No hitNo description
PRINTSPR003672.4E-10115126IPR001471AP2/ERF domain
PRINTSPR003672.4E-10137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MHPPTHSFYT TLIKFSTMRK RINMESDADF NSFATSTPSI FFDTNTSSTS SSSSSSSSSS  60
STSPTSNKDS CTKEHTKTPQ NDSTISQTSL ENKEDSKECK KRQRDNSNQN HHPTYRGVRM  120
RNWGKWVSEI REPRKKSRIW LGTYPTAEMA ARAHDVAALA IKGHSAYLNF PELAQELPRP  180
ASTSPKDIQA AASKAANTAF EVVKHCQITE EQEQEQNQAE QETSSTLSMD NTQEPSSSHS  240
TNDDDTLFDL PDLFPDGNNG LCSFSSWHLC AVDSGFRLEE SFFWENY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-171121711272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.197480.0root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G116700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0989110.0BT098911.1 Soybean clone JCVI-FLGm-13A14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304470.20.0ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ72e-64ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLI1JMV10.0I1JMV1_SOYBN; Uncharacterized protein
STRINGGLYMA03G27050.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.16e-52ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]