PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G114300.2.p
Common NameGLYMA_03G114300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 310aa    MW: 34287 Da    PI: 6.6264
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G114300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox521.2e-16147200256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ +++keq  +Lee F++++ ++  +++ LAk+l+L  rqV vWFqNrRa+ k
  Glyma.03G114300.2.p 147 RKKLRLSKEQALVLEETFKEHNSLNP-QKQALAKQLNLMPRQVEVWFQNRRARTK 200
                          788899******************96.679***********************98 PP
2HD-ZIP_I/II116.91.1e-37147235191
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rlskeq+ +LEe+F+e++ L+p +K++la++L+l prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+kev+eLr +
  Glyma.03G114300.2.p 147 RKKLRLSKEQALVLEETFKEHNSLNP-QKQALAKQLNLMPRQVEVWFQNRRARTKLKQTEVDCEYLKNCCENLTEENRRLQKEVQELR-A 234
                          69***********************9.6899********************************************************9.5 PP

          HD-ZIP_I/II  91 l 91 
                          l
  Glyma.03G114300.2.p 235 L 235
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046182.1E-311112IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.601.1E-16120203IPR009057Homeodomain-like
SuperFamilySSF466894.71E-16129203IPR009057Homeodomain-like
PROSITE profilePS5007114.236143202IPR001356Homeobox domain
SMARTSM003897.1E-14145206IPR001356Homeobox domain
CDDcd000861.75E-13147203No hitNo description
PfamPF000465.3E-14147200IPR001356Homeobox domain
PROSITE patternPS000270177200IPR017970Homeobox, conserved site
SMARTSM003401.9E-25202245IPR003106Leucine zipper, homeobox-associated
PfamPF021839.0E-11202236IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MSEKDDGLGL GLSLKLGWGE NDDDNNNNLN HHQQQQYPFY VHKPPQSVPN QRASFNNLFH  60
FHDRSSETRS FLRGIDVNLP PPPPSAVVDD ENAVSSPNST ISSISGKRSE REGNGDENER  120
TSSSRGGGSD DDDGGACGGD GDGEASRKKL RLSKEQALVL EETFKEHNSL NPQKQALAKQ  180
LNLMPRQVEV WFQNRRARTK LKQTEVDCEY LKNCCENLTE ENRRLQKEVQ ELRALKLSPQ  240
LYMNMNPPTT LTMCPSCERV AVSSTSFSSS ATMPSAPPPA NLNPAGPTIQ RPVPVNPWAA  300
MLNQHRGRP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145151SRKKLRL
2194202RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.384080.0cotyledon| somatic embryo
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G114300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003521080.11e-171homeobox-leucine zipper protein HAT3
SwissprotP466023e-97HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A0R0KI550.0A0A0R0KI55_SOYBN; Uncharacterized protein
STRINGGLYMA03G26701.11e-170(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.12e-76homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]