PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.03G114300.1.p | ||||||||
Common Name | GLYMA_03G114300, LOC100798480 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 311aa MW: 34415.2 Da PI: 6.8671 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.6 | 5e-19 | 147 | 201 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Lee F++++ ++ ++++ LAk+l+L rqV vWFqNrRa+ k Glyma.03G114300.1.p 147 RKKLRLSKEQALVLEETFKEHNSLNPKQKQALAKQLNLMPRQVEVWFQNRRARTK 201 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 124.1 | 6.6e-40 | 147 | 236 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rlskeq+ +LEe+F+e++ L+p++K++la++L+l prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+kev+eLr + Glyma.03G114300.1.p 147 RKKLRLSKEQALVLEETFKEHNSLNPKQKQALAKQLNLMPRQVEVWFQNRRARTKLKQTEVDCEYLKNCCENLTEENRRLQKEVQELR-A 235 69*************************************************************************************9.5 PP HD-ZIP_I/II 91 l 91 l Glyma.03G114300.1.p 236 L 236 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 2.1E-31 | 1 | 112 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 1.2E-18 | 120 | 204 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.24E-18 | 129 | 204 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.475 | 143 | 203 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.9E-16 | 145 | 207 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.2E-16 | 147 | 201 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.77E-15 | 147 | 204 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 178 | 201 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 1.9E-25 | 203 | 246 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 9.1E-11 | 203 | 237 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MSEKDDGLGL GLSLKLGWGE NDDDNNNNLN HHQQQQYPFY VHKPPQSVPN QRASFNNLFH 60 FHDRSSETRS FLRGIDVNLP PPPPSAVVDD ENAVSSPNST ISSISGKRSE REGNGDENER 120 TSSSRGGGSD DDDGGACGGD GDGEASRKKL RLSKEQALVL EETFKEHNSL NPKQKQALAK 180 QLNLMPRQVE VWFQNRRART KLKQTEVDCE YLKNCCENLT EENRRLQKEV QELRALKLSP 240 QLYMNMNPPT TLTMCPSCER VAVSSTSFSS SATMPSAPPP ANLNPAGPTI QRPVPVNPWA 300 AMLNQHRGRP * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 145 | 151 | SRKKLRL |
2 | 195 | 203 | RRARTKLKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.38408 | 0.0 | cotyledon| somatic embryo |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.03G114300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003521080.1 | 0.0 | homeobox-leucine zipper protein HAT3 | ||||
Swissprot | P46602 | 1e-100 | HAT3_ARATH; Homeobox-leucine zipper protein HAT3 | ||||
TrEMBL | K7KEF0 | 0.0 | K7KEF0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G26701.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1239 | 34 | 105 | Representative plant | OGRP196 | 16 | 156 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60390.1 | 8e-79 | homeobox-leucine zipper protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.03G114300.1.p |
Entrez Gene | 100798480 |
Publications ? help Back to Top | |||
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