PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G112600.1.p
Common NameGLYMA_03G112600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 160aa    MW: 18270 Da    PI: 10.0629
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G112600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.52.1e-10851191955
                  AP2  19 IrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          Irdp++ng  +r++lg++ t+eeA  a+++a+ +++g
  Glyma.03G112600.1.p  85 IRDPKKNG--ARVWLGTYETEEEASLACDRAAFEMRG 119
                          99*99997..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.55165127IPR001471AP2/ERF domain
SMARTSM003805.1E-1380133IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-1285128IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.9E-1785128IPR001471AP2/ERF domain
CDDcd000181.17E-1685129No hitNo description
PfamPF008478.8E-788119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MATTTSCDFS SLESIQQYLL ELKHDIFQHS RVFPTMKYVI PTLSQHYSNP DLNSESVTDT  60
NKCWHAKGNT IRWRMKFTLL RNRGIRDPKK NGARVWLGTY ETEEEASLAC DRAAFEMRGS  120
KVKLNFPHLI GSHAPSKPVK VMMKASNQSL AWKGFDLKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-17851322168ATERF1
3gcc_A2e-17851322168ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G112600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236246.25e-41DNA-binding domain-containing protein
TrEMBLA0A0R0KPS91e-117A0A0R0KPS9_SOYBN; Uncharacterized protein
STRINGGLYMA03G26520.12e-40(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-24ethylene-responsive element binding factor 13