PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.03G112400.1.p | ||||||||
Common Name | GLYMA_03G112400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 190aa MW: 21323.4 Da PI: 10.8696 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.7 | 1.4e-18 | 79 | 129 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp++n ++r++lg++ t+eeA a+++a+ k++g Glyma.03G112400.1.p 79 HYRGVRRRP-WGKFAAEIRDPNKN--SARVWLGTYVTEEEAGLAYDRAAFKIHG 129 8********.**********9666..5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.3E-30 | 78 | 138 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.86E-29 | 78 | 139 | No hit | No description |
PROSITE profile | PS51032 | 23.38 | 79 | 137 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-34 | 79 | 143 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.8E-13 | 79 | 129 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.94E-22 | 79 | 138 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 7.8E-13 | 80 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.8E-13 | 119 | 139 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
FQKKKHRQIS LSSSSNMAAT TSCDFSSLEP LQHYLLKHGS KHLVSNGVES INDAKKLSEC 60 KRDQPRASPE VHAPPKWKHY RGVRRRPWGK FAAEIRDPNK NSARVWLGTY VTEEEAGLAY 120 DRAAFKIHGS KAKLNFPHLI GSDVSLSEPM RVSQGSKKKK NLVDLLNRLA KNRKRVGFKS 180 SEISAKIYA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-29 | 76 | 142 | 2 | 68 | ATERF1 |
3gcc_A | 2e-29 | 76 | 142 | 2 | 68 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.03G112400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003520430.1 | 1e-122 | ethylene-responsive transcription factor 1 | ||||
Refseq | XP_028223795.1 | 1e-122 | ethylene-responsive transcription factor 1-like | ||||
TrEMBL | K7KED9 | 1e-137 | K7KED9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G26480.2 | 1e-138 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF512 | 33 | 157 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 2e-36 | ethylene-responsive element binding factor 13 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.03G112400.1.p |