PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.03G112100.1.p | ||||||||
Common Name | GLYMA_03G112100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 198aa MW: 22574.5 Da PI: 10.4733 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.2 | 8.7e-18 | 71 | 121 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeI++p++ r++lg++ t+eeA a+++a+ k++g Glyma.03G112100.1.p 71 HYRGVRRRP-WGKFAAEIWVPKSK--GGRVWLGTYETEEEAGLAYDRAAFKMRG 121 8********.**********8553..38************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.3E-30 | 70 | 130 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.35E-30 | 70 | 131 | No hit | No description |
SuperFamily | SSF54171 | 5.95E-22 | 71 | 130 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.9E-36 | 71 | 135 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.196 | 71 | 129 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.2E-13 | 71 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-13 | 72 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-13 | 111 | 131 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MHETYVSVCL APRHTRKNRV TEHENDSNTI SNVSNHEICL EGVHDSKGLF SCKSEQHVDA 60 REFHTHPVWK HYRGVRRRPW GKFAAEIWVP KSKGGRVWLG TYETEEEAGL AYDRAAFKMR 120 GSKAKLNFPH LVGEHVFLEP KRIRKASKQN SSKPDQSFSP TPETQGSKKR KKLGDLLNRL 180 AKSRGQMQVF EMGSHAN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-27 | 70 | 132 | 4 | 66 | ATERF1 |
3gcc_A | 2e-27 | 70 | 132 | 4 | 66 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 167 | 171 | KKRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.52069 | 0.0 | somatic embryo |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and at low levels in buds and leaves. Not expressed in cell culture. {ECO:0000269|PubMed:7756828}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.03G112100.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC787970 | 3e-39 | KC787970.1 Lotus corniculatus AP2/ERF (ERF060) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014629178.1 | 1e-132 | ethylene-responsive transcription factor 2 | ||||
Swissprot | Q40479 | 1e-32 | ERF2_TOBAC; Ethylene-responsive transcription factor 2 | ||||
TrEMBL | A0A0R0KHK8 | 1e-146 | A0A0R0KHK8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G26437.1 | 1e-117 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF512 | 33 | 157 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 7e-35 | ethylene-responsive element binding factor 13 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.03G112100.1.p |
Publications ? help Back to Top | |||
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