PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G111700.1.p
Common NameGLYMA_03G111700, Glyma03g26310.1, LOC100793366
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 196aa    MW: 21596.4 Da    PI: 10.1455
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G111700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.8e-19121170355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr+++ +g+++AeIrd + ng   r++lg++ tae+Aa a+++a+ k++g
  Glyma.03G111700.1.p 121 YRGVRRRP-WGKYAAEIRDTKRNG--VRVWLGTYETAEDAALAYDRAAFKMRG 170
                          9*******.**********54465..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.0E-32120179IPR001471AP2/ERF domain
PROSITE profilePS5103223.261120178IPR001471AP2/ERF domain
SMARTSM003802.5E-38120184IPR001471AP2/ERF domain
PRINTSPR003679.4E-14121132IPR001471AP2/ERF domain
CDDcd000187.20E-30121180No hitNo description
PfamPF008475.7E-14121170IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-23121179IPR016177DNA-binding domain
PRINTSPR003679.4E-14160180IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MSSHALNTNV NALDHFEIPV TTPFQDVSAS VPSIAAFCRS SSFRNIFLTE NWAELPLKEN  60
DTNDMVIYGA LRDAAATGWF PANGNEVSNV SVAVKMENEG QNSKTTAARG TRTPPKKGLS  120
YRGVRRRPWG KYAAEIRDTK RNGVRVWLGT YETAEDAALA YDRAAFKMRG SKAKLNFPHL  180
IGSDHEPIKV TLKKH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-30117183268ATERF1
3gcc_A1e-30117183268ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.202040.0hypocotyl
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitously expressed after ethylene treatment. {ECO:0000269|PubMed:11950980}.
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00311DAPTransfer from AT2G44840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G111700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310730.0KT031073.1 Glycine max clone HN_CCL_194 AP2-EREBP transcription factor (Glyma03g26310.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003521070.11e-145ethylene-responsive transcription factor 13
RefseqXP_028225034.11e-145ethylene-responsive transcription factor 13-like
SwissprotQ8L9K13e-58ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A445LA261e-143A0A445LA26_GLYSO; Ethylene-responsive transcription factor 13
TrEMBLI1JMQ91e-143I1JMQ9_SOYBN; AP2-EREBP transcription factor
STRINGGLYMA03G26310.11e-144(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-51ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]