PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G111500.1.p
Common NameGLYMA_03G111500, GLYMA_12G118100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 133aa    MW: 15467.1 Da    PI: 9.6013
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G111500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.21e-139411547
                         HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
               SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgkly 47
                         kR +   KKA+EL vLCda+v++i+fsstgkl+
  Glyma.03G111500.1.p  9 KRIENTTKKANELTVLCDAKVSIIMFSSTGKLH 41
                         7888888*************************8 PP
2K-box58.92.1e-2054124173
                K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnell 73 
                          yq + g++ +++++e++q++l+kLk+ ++nL++e   ++G++L++L +++L+ Le+ ++k+ k +R++K +l+
  Glyma.03G111500.1.p  54 YQMTLGVDIWNSHYENMQENLKKLKEVNRNLRKE--FRMGDCLNELGMEDLRLLEEGMDKAAKVVRERKVRLI 124
                          67788899*************************9..67*******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.507147IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-15146IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.62E-19378IPR002100Transcription factor, MADS-box
PfamPF003197.0E-11941IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-9924IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-92445IPR002100Transcription factor, MADS-box
PfamPF014861.4E-1065124IPR002487Transcription factor, K-box
PROSITE profilePS512978.55967132IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MARGKIQIKR IENTTKKANE LTVLCDAKVS IIMFSSTGKL HKIEQSTKQF FDQYQMTLGV  60
DIWNSHYENM QENLKKLKEV NRNLRKEFRM GDCLNELGME DLRLLEEGMD KAAKVVRERK  120
VRLIICSSFC FT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.593891e-116flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed during flower development in stamens and petals. {ECO:0000269|PubMed:17920788}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G111500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3103036e-95AY310303.1 Glycine max MADS-box protein GmNMH7 (NMH7) mRNA, complete cds.
GenBankBT0893626e-95BT089362.1 Soybean clone JCVI-FLGm-1D16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025982666.12e-76floral homeotic protein PMADS 1-like
SwissprotE0CPH46e-50AP3_VITVI; Agamous-like MADS-box protein AP3
TrEMBLI1LS773e-92I1LS77_SOYBN; Uncharacterized protein
STRINGGLYMA03G26261.14e-93(Glycine max)
STRINGGLYMA12G13560.14e-93(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2230424
Representative plantOGRP51991121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.17e-41MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]